Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq42113 109 6e-19 seq1429 87.8 2e-12 >seq42113 Length=344 Score = 109 bits (120), Expect = 6e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 65854 GTAATAGGAATAGATGAAGGCCAATTCTTTCAAGATATTGTAGAGTTTT-GTGAAAATAT 65912 || || ||||| ||||| || ||||| || | ||| | || ||| ||| | || || || Sbjct 136 GTCATTGGAATTGATGAGGGTCAATTTTTCCCGGATTTAGT-GAGCTTTAGCGAGAAAAT 194 Query 65913 GGCAAATAAAGGAAAAATAGTGATAGTTGCAGCATTGGATGGAACATTTAAAAGAAAACC 65972 ||| ||| |||||| | ||| || || |||||| | ||||| ||||| | |||| || Sbjct 195 GGCCAATGGAGGAAAGACAGTAATTGTGGCAGCACTAGATGGTACATTCCAGCGAAAGCC 254 Query 65973 TTTTGGTAATGTATTAAATTTAATTCCATTATCTGAAACAGTAACAAAACTTACAGCTGT 66032 ||||| | || ||| | | |||||| | |||| || ||||||||||| ||||| Sbjct 255 ATTTGGAAGCGTTTTAGAAATCATTCCAGTTGCTGAGCTTGTGACAAAACTTACTGCTGT 314 Query 66033 GTGTATGAAATGTTTTAAAGATGC 66056 |||||| || ||||||||||| Sbjct 315 TTGTATGGTGTGCTTTAAAGATGC 338 >seq1429 Length=23345 Score = 87.8 bits (96), Expect = 2e-12 Identities = 94/125 (75%), Gaps = 6/125 (5%) Strand=Plus/Plus Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA 19140 ||||| ||||| |||||||| || || ||||| || || | || | || | | Sbjct 7528 ATACCCTCTACCGCTGCAAATGCTACAAGTCTCTCAGCAAAGCTTCCCTCTT------GT 7581 Query 19141 ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTA 19200 ||||| |||||||||||||||||||||| || ||||| || |||||||| |||| ||| Sbjct 7582 ATCCACCTCAGTGCCCAATCAGCCTTCTTCTTCACACAAGGGATTGTCTCAATAGCATTG 7641 Query 19201 AATAG 19205 || || Sbjct 7642 AACAG 7646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561619154050680