Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1873 118 9e-21 seq146 102 7e-16 seq276 93.3 3e-13 seq2782 91.5 1e-12 seq30454 89.7 4e-12 >seq1873 Length=16633 Score = 118 bits (130), Expect = 9e-21 Identities = 155/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || ||||| ||| | ||||||||||| |||||||| ||| | | | || || || || Sbjct 2191 ATTGGTATCGATCTTGGAACCACATACAGTTGTGTGGGTATCTTCAAGAAGGGAAAGGTG 2250 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 || ||||| ||||| || || |||||| | ||||||||| | ||| | ||||| || Sbjct 2251 GAGATTATCGCCAACGACCAGGGTAACCGTGTTACTCCATCATGGGTTGCCTTCACAGAG 2310 Query 550115 ACTG-AACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATAC 550173 | || || | ||| ||||||| || ||||| | || |||||| ||| || || || Sbjct 2311 AATGAAAGACTTA-TTGGTGAGGCCGCAAAGAACCAGGCCACTCTTAACCCAGAGAACAC 2369 Query 550174 TATTTTTGATGCTAAACGTTTAATTGGAAGAA 550205 |||||||||| ||| ||| | ||||| |||| Sbjct 2370 CATTTTTGATGTTAAGCGTCTCATTGGCAGAA 2401 >seq146 Length=178297 Score = 102 bits (112), Expect = 7e-16 Identities = 156/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 || ||||| || | || ||||| ||| |||| ||| ||||| || | || || | Sbjct 157371 AGGCGGAGCACCAAGTGGAGGGTGGACTCCTTTTG--AATGTTGTAGTCGGAGAGGGTGC 157428 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 | ||| || ||||| |||||||| || || || | ||| || ||||| |||||||| | Sbjct 157429 GTCCATCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGTTGTTGGTCAGGGGGAATTCCCT 157488 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAGA 563433 | || |||||||| || ||||| |||||| || |||| | | || ||||||| Sbjct 157489 CCTTGTCTTGAATCTTAGTCTTTACGCTCTCAATGGTGTCAGAGCTCTCGAC-TTCGAGA 157547 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTG 563471 |||| ||| || ||||| || || |||||||| || || Sbjct 157548 GTAATAGTCTTGCCAGTGAGGGTCTTAACGAAGATCTG 157585 >seq276 Length=125176 Score = 93.3 bits (102), Expect = 3e-13 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| || ||||| || || || || || ||||| ||||| ||||| || || || ||| Sbjct 96868 GCAGTCATCACTGTGCCTGCCTACTTCAACGACTCCCAACGACAAGCCACCAAGGACGCT 96927 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 |||||||| || ||| | | ||| | ||||| || || || |||||||| || ||| Sbjct 96928 GGACGTATCGCCGGATTGGAGGTTGAAAGGATTATTAACGAGCCCACTGCTGCCGCTCTT 96987 Query 550520 GCATATGGACT 550530 ||||| ||||| Sbjct 96988 GCATACGGACT 96998 >seq2782 Length=10868 Score = 91.5 bits (100), Expect = 1e-12 Identities = 157/224 (70%), Gaps = 12/224 (5%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 |||||||| || | |||||||| ||| | ||| || |||||||||| || || | Sbjct 9773 AGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGG--ATGTTGTAATCAGAGAGGGTAC 9830 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 | ||| || ||||| || |||||||| ||||| | ||| || ||||| |||||||||| Sbjct 9831 GTCCATCCTCTAGTTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGGGGAATTCCTT 9890 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAG---TACA-TTCG 563430 | || || || || || || || | ||| || || || |||| | || ||| Sbjct 9891 CCTTGTCCTGGATCTTGGTCTTCACGGACTCGATGGT----GTCTGAGCTCTCCACCTCG 9946 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | || || ||||| || || || ||||| || ||||| Sbjct 9947 AGGGTGATGGTCTTGCCAGTGAGTGTCTTCACGAAGATCTGCAT 9990 >seq30454 Length=461 Score = 89.7 bits (98), Expect = 4e-12 Identities = 150/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||| ||||| || | |||||||| ||| |||| ||||||||| || | || || Sbjct 22 GAGGCGGAGCACCAAGTGAAGGGTGGACTCCTTTTG--AATATTGTAGTCGGAGAGGGTG 79 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | | ||| || || || || || ||||| || | | ||| || ||||| ||||||||| Sbjct 80 CGTCCATCCTCGAGCTGCTTGCCAGCAAAGATCAAACGTTGTTGGTCAGGGGGAATTCCT 139 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGA 563433 || || || ||||| || ||||||| ||| || || |||| | | || || Sbjct 140 TCCTTGTCCTGAATCTTGGTCTTTACTGACTCGATAGTGTCAGAGCTCTCAACCTCAAGG 199 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAAT 563468 |||| ||| |||||||| || || || ||||| || Sbjct 200 GTAATAGTCTTACCAGTGAGGGTCTTGACGAAGAT 234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4025610637151630