Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_016762.1 Length=49135 Score E Sequences producing significant alignments: (Bits) Value seq5633 201 4e-47 seq5220 170 6e-38 >seq5633 Length=3737 Score = 201 bits (222), Expect = 4e-47 Identities = 520/778 (67%), Gaps = 17/778 (2%) Strand=Plus/Plus Query 11356 GCAGGTCCGCCAGCGCGGACAGTACTTCGGGCTGCAAAGTGGGCTTTGCGGGTTCGGCGG 11415 ||||||| |||||||| |||||||| || ||| || ||| || || || || Sbjct 647 GCAGGTCTTCCAGCGCGCGCAGTACTTGGGCGAGCAGAGGACCGATTGGGGATTGGGAGG 706 Query 11416 GAAGAGGCCGGAACGGAACATGTCGGCCGCGAACTTGATCAGGCCGTGGTGCGACTCGCT 11475 || |||||| |||||||| |||| ||||||| |||||||||| |||| ||| | Sbjct 707 AAACAGGCCGCTGCGGAACATCGCGGCGGCGAACTGGATCAGGCCGCGGTGGTCTTCGGT 766 Query 11476 GCCAGCCATCATCTGGCGCGCGCCGACGATCTCGCCGACTGCCGCCTCGGGCTTGCCCTT 11535 ||| |||| | | |||||| ||| | | || ||| | | | | |||||| Sbjct 767 GCCCACCATGACGCGTCGCGCGTCGAACAGCGGGCTGACCATTGGCGCTGTCTTGCCGGC 826 Query 11536 GGTCTTCAGGCCGATGATCTCGGCCGGCGCGGTGATCGCATCGCCGGTGGTGTGCTCGTA 11595 |||| |||| ||||||||| ||||| | | | ||| || |||||||||||||| Sbjct 827 GGTCGGCAGGGCGATGATCT-GGCCGCC-CACCG-TCGGCTCCTTCGTGGTGTGCTCGTA 883 Query 11596 GAGCAGTTCGTAGGTGCCGATCTGGGCCTTGTTCCCCTT--GGT---CTTGGCCACGCCC 11650 | || | ||| ||||||| ||| ||| || ||||| ||| | ||||| | | Sbjct 884 CAAAAGCTGGTACGTGCCGAGCTGCGCCGACTTGCCCTTCAGGTTCACCTGGCC--GTTC 941 Query 11651 TGGCTCACCGCAGCGCCGCCGGTCTTCACGTCTGCGATGCCGACGCCGTGGCTATCG-CG 11709 || | | || ||||| | ||||||| ||| | ||| | | |||| || || || Sbjct 942 TGAATGATGGC-GCGCC--CAGTCTTCAGGTCAGGAATGGCAATTCCGTC-CTCCCGGCG 997 Query 11710 CTTGATGCGGGCGCGGTCGAGCTGGCCAGTGAGGCGGACGATGACCCCGCCGCCGCAGTC 11769 | || ||| |||||||| | | || || ||||| ||||| |||||||||||||| Sbjct 998 CGCGACGCGTGCGCGGTCCATCGAACCGGTCAGGCGCACGATAGTGCCGCCGCCGCAGTC 1057 Query 11770 GATCTCCATCGGCTTGGTCGTCAACTCGACGGCGACGAAGTCGTAGTGCGGGCTGATGTC 11829 |||||| | |||| | | ||| ||||| || | | ||| | || ||| ||| || Sbjct 1058 GATCTCGAACGGCGAGAGCTTCATTTCGACCGCCGTGTACTCGAACTGAGGGGCGATCTC 1117 Query 11830 GTTGCAGTACTTCGTGTGCAGCGTCAGTCCGGTGGACTCGGCTTCGCGCGGGCTGATGTC 11889 ||| ||| ||| ||||||| ||| ||| | ||||||||||||| | | || Sbjct 1118 CAGGCAATACCGCGTATGCAGCGACAGGCCGATCCGCTCGGCTTCGCGCAACGTCAGATC 1177 Query 11890 GGAGCCGCGCCAGTCGACCTCGAACTCCGGCTGCTGCAGCGTGTGCACCAGCAGTTCCGA 11949 | | ||| ||||||| || | ||| | ||||| |||| | | || | | Sbjct 1178 GTCGTCGCTGTAGTCGACGTCTTGCGTCGGGTTATGCAGGGTGTCGATGAACACGCCGGC 1237 Query 11950 GGCGTCGT-AGGCGCTGATCGGCTCGCCGTTGACCCGTGCCGCGTCGAACGCGGCGGTGC 12008 || |||| ||||| | ||| | ||||| || | ||| ||| ||| ||||||| Sbjct 1238 GGTATCGTCAGGCG-ACAGCGGGTTGCCGTCGAGGTGCGCCTGATCGTTCGCTGCGGTGC 1296 Query 12009 TGGCGTGGATCGCGGTACCGAGCAGCGCCCGGGGGGATGAAGGGCTGCGCATCTTCAGGA 12068 ||||||| | ||| || |||||| || || || || | |||||||| || | Sbjct 1297 TGGCGTGCACCGCCGTGCCGAGCGTGGCGCGCAGGCCCGACGCCTTGCGCATCCCGAGAA 1356 Query 12069 GGTGTACGCCCTCCCACTTGAACGCGCAGTCGAACAGCGCGCCCCAGGACGAGGCGCG 12126 ||||| |||| || | || | |||||||||||||| | ||||| | || ||||| Sbjct 1357 GGTGTTCGCCTTCAAATTTCATTGCGCAGTCGAACAGGGTTCCCCATGCGGATGCGCG 1414 >seq5220 Length=4210 Score = 170 bits (188), Expect = 6e-38 Identities = 173/225 (77%), Gaps = 8/225 (4%) Strand=Plus/Plus Query 21293 CTGGCGATGGAGCTTGGTATCCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAG 21352 ||||||| ||| || | | || ||||||| ||| |||||||| |||||| ||||| Sbjct 1727 CTGGCGAAGGAACTGGACGTACCGGTGATCGCGCTCTCGCAGCTGAACCGCGGTCTGGAA 1786 Query 21353 CAGCGGCCGAACAAGCGACCGATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAG 21412 ||||| ||||||||||| ||| |||||||||||||||| || || || || ||||||||| Sbjct 1787 CAGCGCCCGAACAAGCGGCCGGTGATGTCGGACCTGCGTGAATCGGGCGCAATCGAGCAG 1846 Query 21413 GACGCCGATGTGATCATGTTCGTGTACCGCGACGAGGTCTACCACCCGGATACCCAGTAC 21472 ||||| || || ||| ||||| | || |||||||| |||||| ||||||| |||| | Sbjct 1847 GACGCGGACGTCATCCTGTTCATCTATCGCGACGAAGTCTACAACCCGGA----CAGTCC 1902 Query 21473 CG----CGGCGTGGCTGAGTTGATCATCGCGAAGCACCGCAACGG 21513 || ||| ||| || | ||||||| ||||| || ||||| Sbjct 1903 CGACAAGGGCACGGCCGAAATCATCATCGGCAAGCAGCGTAACGG 1947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156980385939718