Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_018283.1 Length=58065 Score E Sequences producing significant alignments: (Bits) Value seq8688 104 9e-18 >seq8688 Length=1745 Score = 104 bits (114), Expect = 9e-18 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 13877 TGCGGAAGGTCAGCGCTGGCGAGATCGCGATCCCGCTCGTTCGCATGGAGAGCAGCCAGA 13936 |||| ||| | |||||||||||||||| | |||||||| ||||||||| |||| Sbjct 350 TGCGCAAGATTTCCGCTGGCGAGATCGCGCTGCCGCTCGTGCGCATGGAGTCGTCGCAGA 291 Query 13937 AGGCCGCGAAGGGCGTGCACCTGATCGACCTGGCCGCCTATCTCGACGAGCGGCGCAGCG 13996 | | |||||||||||| ||| ||| || ||||| | || ||||| |||| |||| | Sbjct 290 AAGGCGCGAAGGGCGTTCACTTGACAGATCTGGCTGATTACATCGACAAGCGCCGCAAAG 231 Query 13997 CCGCCGTGAAGGAGTGCCAGCAGCT 14021 | ||||| || |||||| | ||||| Sbjct 230 CGGCCGTCAAAGAGTGCAATCAGCT 206 Score = 98.7 bits (108), Expect = 4e-16 Identities = 103/132 (78%), Gaps = 4/132 (3%) Strand=Plus/Plus Query 18421 TGCACTTCCACGATCTGCGCCATGACGGCGTATC-GC-GTCTGTTCGAAATGGGTTGGAA 18478 ||||| | ||||| |||||||||| ||| | | || | || ||||| ||||| | || Sbjct 9 TGCACCTGCACGACATGCGCCATGAAGGC--ACCAGCAGGCTATTCGAGATGGGGTTGAC 66 Query 18479 CATCCCGCACGTCGCGGCCGTGTCCGGGCACCGAAGCTGGAAAAGCCTTCAGCGCTACAC 18538 ||| |||||||| ||||| ||| | ||||||||||||||| ||||| ||||||| || Sbjct 67 CATTCCGCACGTGGCGGCGGTGACAGGGCACCGAAGCTGGTCGAGCCTGAAGCGCTATAC 126 Query 18539 GCACCTACGGCA 18550 |||||| |||| Sbjct 127 GCACCTCAGGCA 138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185532738353138