Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_018452.1 Length=61847 Score E Sequences producing significant alignments: (Bits) Value seq4462 325 2e-84 seq8688 118 4e-22 seq5168 89.7 2e-13 >seq4462 Length=5303 Score = 325 bits (360), Expect = 2e-84 Identities = 275/338 (81%), Gaps = 0/338 (0%) Strand=Plus/Minus Query 9963 CATGGCATCCGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCG 10022 |||||||||||| ||||| || |||||||||||||| ||||||||||| |||||| || Sbjct 5098 CATGGCATCCGTGAACAAGGTGATCCTCGTCGGCAACCTCGGCGCCGATCCGGAAGTGCG 5039 Query 10023 CTACCTCCCGAGCGGCGACGCAATCTCCAACATCCGCCTCGCTACGACCGATCGCTACAA 10082 ||| || |||||||||||||| | | ||||| |||||||| |||||||| |||||||| Sbjct 5038 CTATCTGCCGAGCGGCGACGCCGTGGCGAACATTCGCCTCGCCACGACCGACCGCTACAA 4979 Query 10083 GGACAAGGCGAGCGGCGAGATGAAGGAATCGACCGAATGGCACCGCGTCAGCTTCTTCGG 10142 |||||||||| ||||||| | |||||| |||||||||||||||||| |||||||| Sbjct 4978 GGACAAGGCGTCCGGCGAGTTCAAGGAAATGACCGAATGGCACCGCGTGTCGTTCTTCGG 4919 Query 10143 CCGCCTCGCCGAGATCGTCGACGAGTACCTGCGCAAGGGCGCGCCGGTCTACATCGAGGG 10202 ||||| |||||||||||| ||||||||| ||||| || |||| || ||||| || Sbjct 4918 GCGCCTGGCCGAGATCGTCTCGGAGTACCTGAAGAAGGGTTCGTCGGTGTATATCGAAGG 4859 Query 10203 CCGCATCCGCACGCGGAAGTGGCAGGATAACGCCGGCCAGGATCGCTACACGACCGAGAT 10262 ||||||||||||||| || ||||| | | | |||| || |||||| |||| || || Sbjct 4858 CCGCATCCGCACGCGCAAATGGCAAGCGCAGGACGGCACCGACCGCTACTCGACGGAAAT 4799 Query 10263 CGTCGCCGAGAAGATGCAGATGCTCGGCGACCGCCGCG 10300 ||||||||| ||||||||||||| || | |||| ||| Sbjct 4798 CGTCGCCGACCAGATGCAGATGCTGGGTGGCCGCAGCG 4761 >seq8688 Length=1745 Score = 118 bits (130), Expect = 4e-22 Identities = 140/188 (74%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 3374 GTGCACGCCCTTCGCGCACTTCTGCGAGCGCTCCATCCGCACGATCGGCAAAGTGATGTC 3433 ||| ||||||||||||| |||||||| |||||| ||||||| ||||| | ||| || Sbjct 271 GTGAACGCCCTTCGCGCCTTTCTGCGACGACTCCATGCGCACGAGCGGCAGCGCGATCTC 330 Query 3434 GCCGTCGAGTACCTTCCGCTGGAGCTTTTCGGGA--GACAGGTGCGCGAAGTAGTCGCGG 3491 ||| || | ||| ||| | || | |||| | | || ||||||||||||||||| Sbjct 331 GCCAGCGGAAATCTTGCGCAGCAG--TGTCGGCACCGTGAGCGGCGCGAAGTAGTCGCGG 388 Query 3492 CACACCAGATCGAGGGGGATGACGGCGCGACCGTCGTATTGCGCCATCAGAAGGAAAGCG 3551 ||||| |||| ||||| || ||| ||| |||||| |||||||||||||| || Sbjct 389 CACACGGTTTCGATCGGGATTACCGCGGCCGCGTTGTATTGGGCCATCAGAAGGAAGACG 448 Query 3552 GTGTTCAT 3559 || ||||| Sbjct 449 GTATTCAT 456 >seq5168 Length=4284 Score = 89.7 bits (98), Expect = 2e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 8262 GGAGGCGTGGCAGAGTGGTCTAATGCAGCGGATTTGAAATCCGTCATACGTGCGAGCGTA 8321 ||||| ||||||||||||| |||||| ||| |||||| ||| | | | | | | | Sbjct 2985 GGAGGTGTGGCAGAGTGGTTGAATGCACCGGTCTTGAAAACCGGCGAAGGGGTAACCCTT 2926 Query 8322 TCGTGAGTTCGAATCTCACCGCCTCCGCCAGTTTTTTACCCCCGTCGCG 8370 |||||||||||||||||||||||||||||||| || | || | |||| Sbjct 2925 CCGTGAGTTCGAATCTCACCGCCTCCGCCAGTTCTTGAAGCCTGGCGCG 2877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 197625123216246