Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30]
69,687 sequences; 205,175,886 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq59190 96.9 3e-15
seq22 87.8 1e-12
seq6776 84.2 2e-11
seq66879 82.4 6e-11
>seq59190
Length=243
Score = 96.9 bits (106), Expect = 3e-15
Identities = 145/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| ||||| || || ||||| || ||||| || | | ||| | |||| || | |||
Sbjct 234 TGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGTCCATCCTCGAGCTGC 175
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || || || || | ||||||||| ||||| || || || ||||| ||||| || ||
Sbjct 174 TTTCCAGCGAAGATGAGACGCTGTTGGTCGGGAGGGATTCCCTCTTTGTCTTGGATCTTG 115
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| ||| | || | ||||||||| | || || ||||| || | || || || ||
Sbjct 114 GTCTTGACACTCTCGATAGTGTCAGAGGACTCGACCTCAAGGGTAATTGTCTTACCCGTG 55
Query 101447 AAAGTTTTTACAAATATCTGCATGGT 101472
| || || || || |||||||||||
Sbjct 54 AGGGTCTTGACGAAAATCTGCATGGT 29
>seq22
Length=338851
Score = 87.8 bits (96), Expect = 1e-12
Identities = 144/208 (69%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| || || ||||| || || || || || ||||| ||| | || | |||| ||
Sbjct 331549 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGTCCATCCTCA 331608
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
| ||||| || ||||| |||||||||||||| ||||| || ||||| || || |||||
Sbjct 331609 AGCTGCTTTCCGGCAAAGATCAAACGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCTTGG 331668
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || || || | || | || ||||| | || || || | ||||| || ||
Sbjct 331669 ATCTTGGTCTTCACGCTCTCGATGGTATCAGAGCTCTCGACCTCTAAAGTGATGGTCTTT 331728
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCA 101468
||||| || || || || || |||| ||
Sbjct 331729 CCGGTCAAGGTCTTGACGAAAATCTACA 331756
>seq6776
Length=2740
Score = 84.2 bits (92), Expect = 2e-11
Identities = 142/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| || || || || || || || ||||| || | || || | | | || |||| |||
Sbjct 1415 TGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCCTCCTCCAGCTGC 1356
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || || || |||| ||||| || || ||||| ||||| || || || || || ||
Sbjct 1355 TTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTG 1296
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| ||| | || | ||||| || ||||| || || | || ||| ||||||||
Sbjct 1295 GCCTTCACATTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCGATCGTCTTGCCGGTC 1236
Query 101447 AAAGTTTTTACAAATATCTGCATGGT 101472
| || || || || |||||||||||
Sbjct 1235 AGCGTCTTCACGAAGATCTGCATGGT 1210
>seq66879
Length=210
Score = 82.4 bits (90), Expect = 6e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|||||||| || || | || | || || || || ||||| || ||||| |||
Sbjct 67 CCTCCTCTCAAGCGGAGGACAAGGTGCAGTGTGCTCTCCTTTTGGATGTTGTAGTCGCTC 126
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| ||| | |||| ||||| ||||| || || || |||||||||||||| || || ||
Sbjct 127 AAAGTGCGACCATCCTCCAACTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCAGGGGGG 186
Query 101363 ATGCCTTCTTTATCTTGAATTTT 101385
|| |||||||| || ||||||||
Sbjct 187 ATTCCTTCTTTGTCCTGAATTTT 209
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395941836668259
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |