Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq59190 96.9 3e-15 seq22 87.8 1e-12 seq6776 84.2 2e-11 seq66879 82.4 6e-11 >seq59190 Length=243 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || ||||| || ||||| || | | ||| | |||| || | ||| Sbjct 234 TGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGTCCATCCTCGAGCTGC 175 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | ||||||||| ||||| || || || ||||| ||||| || || Sbjct 174 TTTCCAGCGAAGATGAGACGCTGTTGGTCGGGAGGGATTCCCTCTTTGTCTTGGATCTTG 115 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||||||||| | || || ||||| || | || || || || Sbjct 114 GTCTTGACACTCTCGATAGTGTCAGAGGACTCGACCTCAAGGGTAATTGTCTTACCCGTG 55 Query 101447 AAAGTTTTTACAAATATCTGCATGGT 101472 | || || || || ||||||||||| Sbjct 54 AGGGTCTTGACGAAAATCTGCATGGT 29 >seq22 Length=338851 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || ||||| || || || || || ||||| ||| | || | |||| || Sbjct 331549 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGTCCATCCTCA 331608 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || ||||| |||||||||||||| ||||| || ||||| || || ||||| Sbjct 331609 AGCTGCTTTCCGGCAAAGATCAAACGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCTTGG 331668 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | || ||||| | || || || | ||||| || || Sbjct 331669 ATCTTGGTCTTCACGCTCTCGATGGTATCAGAGCTCTCGACCTCTAAAGTGATGGTCTTT 331728 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCA 101468 ||||| || || || || || |||| || Sbjct 331729 CCGGTCAAGGTCTTGACGAAAATCTACA 331756 >seq6776 Length=2740 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || || || || ||||| || | || || | | | || |||| ||| Sbjct 1415 TGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCCTCCTCCAGCTGC 1356 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || |||| ||||| || || ||||| ||||| || || || || || || Sbjct 1355 TTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTG 1296 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||||| || ||||| || || | || ||| |||||||| Sbjct 1295 GCCTTCACATTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCGATCGTCTTGCCGGTC 1236 Query 101447 AAAGTTTTTACAAATATCTGCATGGT 101472 | || || || || ||||||||||| Sbjct 1235 AGCGTCTTCACGAAGATCTGCATGGT 1210 >seq66879 Length=210 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| || || | || | || || || || ||||| || ||||| ||| Sbjct 67 CCTCCTCTCAAGCGGAGGACAAGGTGCAGTGTGCTCTCCTTTTGGATGTTGTAGTCGCTC 126 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| ||||| ||||| || || || |||||||||||||| || || || Sbjct 127 AAAGTGCGACCATCCTCCAACTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCAGGGGGG 186 Query 101363 ATGCCTTCTTTATCTTGAATTTT 101385 || |||||||| || |||||||| Sbjct 187 ATTCCTTCTTTGTCCTGAATTTT 209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395941836668259