Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq6776 105 5e-18 seq146 95.1 9e-15 seq30454 89.7 4e-13 seq2782 89.7 4e-13 seq62579 86.0 5e-12 seq45338 82.4 6e-11 >seq6776 Length=2740 Score = 105 bits (116), Expect = 5e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 ||||||| | || |||| ||||| || |||||| ||| || || || ||||| || | Sbjct 1441 CGCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCG 1382 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | || | || | || |||| |||||| ||||| || ||||| ||||| || |||| | Sbjct 1381 AGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCG 1322 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | |||||||||||| ||||| || ||| | | | || || ||||| Sbjct 1321 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGCTCGGCTCCA 1262 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||||| || ||||| || || |||| || || || || |||||||| ||| Sbjct 1261 CCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGGTG 1209 >seq146 Length=178297 Score = 95.1 bits (104), Expect = 9e-15 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || ||| ||| || ||||||||||| || || | || Sbjct 157691 AGGCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATATTGTAGTCGCTGAGGGTGCGT 157750 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | ||||| || || || || || |||||||| || | ||||| |||||| Sbjct 157751 CCGTCCTCGAGTTGCTTTCCAGCGAAGATGAGGCGCTGTTGGTCAGGGGGAATTCCCTCC 157810 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||||| || || | | | || || ||| ||||||| ||| Sbjct 157811 TTGTCTTGAATCTTTGTCTTGACGCTCTCGATGGTGTCAGAGCTCTCGACCTCCAACGTG 157870 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCA 48765 || || ||||| || | ||||| ||||||||||||| Sbjct 157871 ATGGTCTTTCCAGTGAGTGTTTTCACAAAAATCTGCA 157907 >seq30454 Length=461 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || ||| ||| |||||||||||||| || || || | || Sbjct 23 AGGCGGAGCACCAAGTGAAGGGTGGACTCCTTTTGAATATTGTAGTCGGAGAGGGTGCGT 82 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || ||||| |||| || ||||| || | ||||| || ||| Sbjct 83 CCATCCTCGAGCTGCTTGCCAGCAAAGATCAAACGTTGTTGGTCAGGGGGAATTCCTTCC 142 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| ||||| || | | || || || ||| ||||| | ||| Sbjct 143 TTGTCCTGAATCTTGGTCTTTACTGACTCGATAGTGTCAGAGCTCTCAACCTCAAGGGTA 202 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCA 48765 || || || || || | || || || || |||| || Sbjct 203 ATAGTCTTACCAGTGAGGGTCTTGACGAAGATCTACA 239 >seq2782 Length=10868 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || ||| |||||| ||||| ||||||||||| || | || Sbjct 9153 AGGCGAAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGAAAGGGTACGT 9212 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | ||||| || ||||| || || || ||||| || | ||| | || ||| Sbjct 9213 CCGTCCTCTAGTTGCTTTCCAGCAAAGATGAGGCGTTGTTGGTCAGGGGGGATTCCTTCC 9272 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| ||||| || | | | || || ||| ||||||| ||| Sbjct 9273 TTGTCCTGGATCTTAGTCTTTACGGACTCGATGGTATCAGAGCTCTCGACCTCCAAGGTA 9332 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCT 48762 || || || || || | || || || ||||||| Sbjct 9333 ATTGTCTTACCAGTGAGGGTCTTGACGAAAATCT 9366 Score = 89.7 bits (98), Expect = 4e-13 Identities = 162/236 (69%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || | ||| || | |||||| || || ||| ||| || || || ||||||||||| Sbjct 9763 GCCACCACGTAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGA 9822 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || || | ||||| |||||||| || || || ||||| || | ||| Sbjct 9823 GAGGGTACGTCCATCCTCTAGTTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGGGG 9882 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || || |||||||| ||||| || || || | | | ||||| |||||| Sbjct 9883 AATTCCTTCCTTGTCCTGGATCTTGGTCTTCACGGACTCGATGGTGTCTGAGCTCTCCAC 9942 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT-CGTGTGT 48773 ||| | || || || || || || | || || || || |||||||| | ||||| Sbjct 9943 CTCGAGGGTGATGGTCTTGCCAGTGAGTGTCTTCACGAAGATCTGCATGCTTGTGT 9998 >seq62579 Length=228 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || |||| ||||| || |||||| ||| || || || ||||| || || Sbjct 76 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGA 135 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || |||| |||||| ||||| || ||||| ||||| || |||| || Sbjct 136 GAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGG 195 Query 48659 AACGCCCTCCTTGTC 48673 | |||||||||||| Sbjct 196 GATGCCCTCCTTGTC 210 >seq45338 Length=320 Score = 82.4 bits (90), Expect = 6e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 9133 TCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCA 9192 || ||||||||||| ||||| ||||||| ||| || ||||| || ||||| ||||| Sbjct 306 TCTGAATGATTGAAGAGCACAACTCCCAAGTTGCCTCTGTAGTCGCAGTCGATTACACCC 247 Query 9193 GCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACCGTAG 9252 || |||||||| ||| | ||| || ||||||||||| || || | || || || Sbjct 246 GCTCCCACGTCAATGTGATTCTTCCATGCGAGTCCAGAGCGAGGTGCAACTCTTCCATAA 187 Query 9253 CATCCCACCGGTAATTGCACCCGCAAGTCGGTCATGACCAGCCCCTTGCC 9302 ||||| | || | | | ||| || ||||| || | |||||||| Sbjct 186 TATCCCTCTGGGACAGCGATCGCCAAATCTGTCATAACTAATCCCTTGCC 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380614065767901