Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_019405.1 Length=215710 Score E Sequences producing significant alignments: (Bits) Value seq6342 107 3e-18 >seq6342 Length=3070 Score = 107 bits (118), Expect = 3e-18 Identities = 296/454 (65%), Gaps = 26/454 (6%) Strand=Plus/Plus Query 27790 GTCGAGGACCGCGACCTGTGGCGCTTCGACCAGGAAGGCTCGCGCGAGGTCTCGGCCTAC 27849 ||||||||||||||||| ||||| ||| | | | ||| | | ||| | ||| | | Sbjct 1660 GTCGAGGACCGCGACCTCTGGCGATTCAAGCTTGCCGGCACCAGGGAGATTCAGGCGTTC 1719 Query 27850 ATCTTCGCCCACGACTACCGCTTCGACAACTGGGACGCCCTGGCCGGCG-AGATCGAGAT 27908 ||||| ||||||| ||| ||||| ||||| ||| |||| ||||| || Sbjct 1720 GTCTTCTCCCACGAATACACATTCGAACTATGGGATCGCCTCATGGGCGCAGATC-AGGC 1778 Query 27909 CGACCTCCCGACGGTGATCGCCGCCGGCGCGGCGATCGAGAAGAAGCACCACAAGGACAT 27968 || ||| || | ||| ||||| ||||| ||||||||| |||||| |||||||| || Sbjct 1779 TGAACTCGTGAAGATGACGGCCGCGGGCGCCGCGATCGAGCGGAAGCATCACAAGGATAT 1838 Query 27969 CGGCGAGCTTCTGCGCCAGACCCAGCGCGAGATGATCATCGGCGGCTACCGCGTGCCGGT 28028 | |||||| || ||||| || | |||| ||| ||| |||||| || Sbjct 1839 TGCCGAGCTGGTGAAGGTTTGTAAGCGCCGCGTGGTGATCGCCGGTTACGACGTGCCAGT 1898 Query 28029 CGCCAACATGCCCTACACCCTGGCCAGCGACGCGGCCAACAAGATGGCCTCCACCCCGCG 28088 || | | | ||||||||| || | |||||||| | | || |||| ||| | | Sbjct 1899 TGCGAGCCTACCCTACACCATGTCGAGCGACGCCGGCCACCTCATGG------CCCAGGG 1952 Query 28089 CGCCGACGGCACCCTGCCGGCCTTCGCCGCCTGCTACTTCGACAACAACGCCGGCAAGCG 28148 | ||||||||||| ||||||| |||| || ||| || Sbjct 1953 TG---------------AAGCCTTCGCCGCTTGCTACTGGGACACGGCCGAGGGC---CG 1994 Query 28149 GGCCTTCTCGCTGCGGGCGATCGACGGCGGCGCCGACGTCTCGCAGATCGCCAGTCAGTA 28208 ||||| ||||| | | |||| || |||||| || ||||||||| || || Sbjct 1995 AACCTTCAGCCTGCGATCCACTGACGATGGTATCGACGTGTCTGAGATCGCCAAACACTA 2054 Query 28209 CGGCGGCGGCGGGCACGCCAAGGCCGCCGGCTTC 28242 ||||||||| || || || ||||| |||| ||| Sbjct 2055 CGGCGGCGGTGGTCATGCTAAGGCGTCCGGTTTC 2088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 689542824188400