Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_019410.1 Length=221828 Score E Sequences producing significant alignments: (Bits) Value seq6342 107 3e-18 >seq6342 Length=3070 Score = 107 bits (118), Expect = 3e-18 Identities = 296/454 (65%), Gaps = 26/454 (6%) Strand=Plus/Plus Query 27929 GTCGAGGACCGCGACCTGTGGCGCTTCAACCAGGAAGGCTCGCGCGAGGTCTCGGCCTAC 27988 ||||||||||||||||| ||||| ||||| | | ||| | | ||| | ||| | | Sbjct 1660 GTCGAGGACCGCGACCTCTGGCGATTCAAGCTTGCCGGCACCAGGGAGATTCAGGCGTTC 1719 Query 27989 ATCTTCGCCCACGACTACCGCTTCGACAACTGGGACGCCCTGGCCGGCG-AGATCGAGAT 28047 ||||| ||||||| ||| ||||| ||||| ||| |||| ||||| || Sbjct 1720 GTCTTCTCCCACGAATACACATTCGAACTATGGGATCGCCTCATGGGCGCAGATC-AGGC 1778 Query 28048 CGACCTCCCGACGGTGATCGCCGCCGGGGCGGCGATCGAGAAGAAGCACCACAAGGACAT 28107 || ||| || | ||| ||||| || || ||||||||| |||||| |||||||| || Sbjct 1779 TGAACTCGTGAAGATGACGGCCGCGGGCGCCGCGATCGAGCGGAAGCATCACAAGGATAT 1838 Query 28108 CGGCGAGCTTCTGCGCCAGACCCAGCGCGAGATGATCATCGGCGGCTACCGCGTGCCGGT 28167 | |||||| || ||||| || | |||| ||| ||| |||||| || Sbjct 1839 TGCCGAGCTGGTGAAGGTTTGTAAGCGCCGCGTGGTGATCGCCGGTTACGACGTGCCAGT 1898 Query 28168 CGCCAACATGCCCTACACCCTGGCCAGCGACGCGGCCAACAAGATGGCCTCCACCCCGCG 28227 || | | | ||||||||| || | |||||||| | | || |||| ||| | | Sbjct 1899 TGCGAGCCTACCCTACACCATGTCGAGCGACGCCGGCCACCTCATGG------CCCAGGG 1952 Query 28228 CGCCGACGGCACCCTGCCGGCCTTCGCCGCCTGCTACTTCGACAACAACGCCGGCAAGCG 28287 | ||||||||||| ||||||| |||| || ||| || Sbjct 1953 TG---------------AAGCCTTCGCCGCTTGCTACTGGGACACGGCCGAGGGC---CG 1994 Query 28288 GGCCTTCTCGCTGCGGGCGATCGACGGCGGCGCCGACGTCTCGCAGATCGCCAGCCAGTA 28347 ||||| ||||| | | |||| || |||||| || ||||||||| || || Sbjct 1995 AACCTTCAGCCTGCGATCCACTGACGATGGTATCGACGTGTCTGAGATCGCCAAACACTA 2054 Query 28348 CGGCGGCGGCGGCCACGCCAAGGCCGCCGGCTTC 28381 ||||||||| || || || ||||| |||| ||| Sbjct 2055 CGGCGGCGGTGGTCATGCTAAGGCGTCCGGTTTC 2088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709103370385760