Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq612 152 1e-31 seq11685 136 7e-27 >seq612 Length=73199 Score = 152 bits (168), Expect = 1e-31 Identities = 405/609 (67%), Gaps = 26/609 (4%) Strand=Plus/Plus Query 213372 GGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGG 213431 ||||| |||||| ||||| ||||||||||||||||| ||| || ||||||| | | Sbjct 23597 GGGTAGTAGTTGCCATCGATAATCTTGTTGAGGTTGCGCGTGATAACCTTGGTGATTTCG 23656 Query 213432 GCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATG 213491 || | || ||| |||| |||| ||| | || || |||| ||| || || || Sbjct 23657 AAAAGCTTCTGGTGGTTGA--ACGT----CCCATTCTCGACGAACTTAGGTAGCGCAATA 23710 Query 213492 CTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCAC 213551 || |||||||| || || ||||| | | | ||||| || || ||||| ||||| Sbjct 23711 GACGCAAGGTTGCACACAGCAACCTCGTCTGGCGCGGTGTATTCGATTATCTCTGTGCAG 23770 Query 213552 AGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCC 213611 |||||||| || |||||| || ||||| || || || ||||| |||||| || ||| Sbjct 23771 AGGTTGCTACAAGAGATGGTCCCAAGGTTTTGCTGATTCGACTTCCTGTTGGCCGAGTCC 23830 Query 213612 TTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGC--TCCAGA 213669 ||||| |||||||| || |||||||||| || | | | || | |||| ||| | Sbjct 23831 TTGTACAGCATGTACGGATTACCGGTCTCTATTTGAGCCTCGAGGA--TGGCAAACCACA 23888 Query 213670 GGTACCTGGCCTTGACCACCCGCCTGAC--AG--CTCCGGGCGTAGCCTCGTACTGTTCG 213725 | |||||| | | |||| | || ||| | || || |||| | Sbjct 23889 AATCTTGGGCCTTCATTGTCTTCCTGGCCAAGCCCTCAGTTTGT----TCATACTTGGTG 23944 Query 213726 TAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGC---GGGA 213782 || | ||| | ||||| | ||||||||| | ||||| | | | | ||| Sbjct 23945 TACAACTCCTCGAATTGTTCTCCCCAGACCTCAGCAAGTCCTTTA---GCTTCGTTGGGG 24001 Query 213783 CACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCAC 213842 || | |||| |||||| || | || || | || |||||| || || |||||||| Sbjct 24002 CAGAAGAGGGACCAGTCACCATTTTCCTCCACACGCTTCATGAAGAGATCTGGGACCCAA 24061 Query 213843 AGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCT 213902 || ||| ||| | ||| | | | |||| ||| || | ||| ||||| ||||| Sbjct 24062 AGTGCGTAGAATAAGTCTCGCGCGCGATTCTCCTCCTTGCCGGTGTTCTTGCGAAGATCG 24121 Query 213903 A-GAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCT 213961 | ||||| | | ||||| || ||||| || |||| ||| | |||||||| ||| | Sbjct 24122 AGGAAAGATATA-ATGTCAGCATGCCAGGGTTCCAGGTAAACTGCAAAGGCTCCCTTTCG 24180 Query 213962 CTTGCCGCC 213970 ||||||||| Sbjct 24181 CTTGCCGCC 24189 >seq11685 Length=1128 Score = 136 bits (150), Expect = 7e-27 Identities = 339/503 (67%), Gaps = 9/503 (2%) Strand=Plus/Minus Query 48188 AGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAG 48247 || || ||||| | || | || || |||||||| | ||| ||| || || || ||| Sbjct 1114 AGCCCTGGCATCAGACCGCGCTTCTTCAGCCAGAACAGTGCGCAGAACGACCCGGAAAAG 1055 Query 48248 AAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCT 48307 || ||||||||||| || || || || | |||| ||| | ||||| || || || Sbjct 1054 AAAATGCCCTCCACCGCGGCAAAGCCGATCAGCCGCTC-CTGAAAGCT-CGCGCTGCTCC 997 Query 48308 GAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCC 48367 |||||| | ||||| || |||||||||| |||||| || ||||||| ||| || Sbjct 996 C-GATCCACCGCACGGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGTATCGCG 938 Query 48368 CGGAAGAGCTTCTTGCACTCACCT-GC-GTCCGCAACATAGGTAGTGAGCAGCTTTGCGT 48425 | | ||| | || || ||| || ||||| | || || |||||| | || Sbjct 937 TGCAGCAGCCGCA-GCT-TCTCCTCGCTGTCCGTGATGTACGTGTCCAGCAGCACAGAGT 880 Query 48426 ACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAA 48485 || |||| ||||| | ||||| || | ||||||||||||||| || | ||||| Sbjct 879 ACGTCTCCGAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAGAATGCGCGCGCCTCTG 820 Query 48486 ACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAG 48545 ||||| ||| || | ||| | || | |||||||| ||||||| || || Sbjct 819 GCACCTTCACGTCGCTCATGAAGCGCTGCGCGAGATTCTCGATGACTATGCCGTCGCTGC 760 Query 48546 CAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCC 48605 | || |||||||| || ||||| || | ||| || ||||| || | | || | || Sbjct 759 CGGCGAAGAAGGCGAGCACATGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGCGTTGCCC 700 Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGA-CGCGAGTGCT 48664 || ||| | ||| ||||||||||| | || || || ||||||| | | | | ||| Sbjct 699 AGTCCTTCATGTCGTTGCCCAGGTCGATCTCCTCGACCGTCCAGATGCAGCTCTCCTGC- 641 Query 48665 TTTTTGTACATGCCCCATATGTC 48687 | |||||| ||| ||| ||||| Sbjct 640 TCCTTGTACTTGCGCCAGATGTC 618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930721353422080