Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq11685 127 4e-24 seq612 118 2e-21 >seq11685 Length=1128 Score = 127 bits (140), Expect = 4e-24 Identities = 318/471 (68%), Gaps = 19/471 (4%) Strand=Plus/Plus Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGT--ACGCTCTATCC 25569 |||||| | ||| ||||| || |||| ||| |||||| | | |||| ||||| | | Sbjct 656 CTGGACGGTCGAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGCAACGCTGAA--C 713 Query 25570 AAAGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATA 25629 | | |||| ||| || ||||| | ||| | || ||||| || | | || || ||| Sbjct 714 GACGGGGAGCGGCACTTCATCAAGCATGTGCTCGCCTTCTTCGCCGGCAGCGACGGCATA 773 Query 25630 GTGAACGAGAATCTGTGCG-AGAGATTCACCAGGGAAGTGCAGTACGTG---GAGGCCAA 25685 || | ||||||||| ||| || | |||| || || ||| || ||| ||||| Sbjct 774 GTCATCGAGAATCTC-GCGCAGCGCTTCATGAGCGACGTGAAG---GTGCCAGAGGCGCG 829 Query 25686 GTGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCT 25745 |||||||| |||||| || || || || | ||||| ||| ||| | ||| Sbjct 830 CGCATTCTACGGGTTCCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCTGTGCT 889 Query 25746 TCTGATGACGTACATTACAGACGTCGCCGAGAGAGAT-CGGCTGTTTGGTGCCATCGAGC 25804 ||| |||||||| || ||| || |||| || | |||||| | || || || Sbjct 890 GCTGGACACGTACATCACGGACAGCGAGGAGA-AGCTGCGGCTGCTGCACGCGATACAGA 948 Query 25805 ACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCG 25864 || || ||||| ||| ||||||| ||||||| || ||||||| ||| |||| Sbjct 949 CGATCCCGTGCATCCAGAAGAAGGCGGAGTGGGCCGTGCGGTGGATCGGGAGC---AGCG 1005 Query 25865 CTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTT 25924 | | ||| ||||||||| | | |||||| || ||||||||||| || || ||| | Sbjct 1006 CGAGCTTTCAGGAGCGGCTGATCGGCTTTGCCGCGGTGGAGGGCATTTTCTTTTCCGGGT 1065 Query 25925 CGTT-TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTG 25974 |||| ||| || | |||||||| ||| || || ||||| |||||| Sbjct 1066 CGTTCTGC-GCACTGTTCTGGCTGAAGAAGCGCGGTCTGATGCCAGGGCTG 1115 >seq612 Length=73199 Score = 118 bits (130), Expect = 2e-21 Identities = 319/488 (65%), Gaps = 0/488 (0%) Strand=Plus/Plus Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 || ||||| ||||| || |||||||| ||| || | || |||||||| |||||| Sbjct 23714 GCAAGGTTGCACACAGCAACCTCGTCTGGCGCGGTGTATTCGATTATCTCTGTGCAGAGG 23773 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833 ||||| || ||||||||| |||| | ||||| ||||| | ||||| | ||||||| Sbjct 23774 TTGCTACAAGAGATGGTCCCAAGGTTTTGCTGATTCGACTTCCTGTTGGCCGAGTCCTTG 23833 Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893 || ||||| | ||| || ||||| | |||||| | || || ||| | ||| Sbjct 23834 TACAGCATGTACGGATTACCGGTCTCTATTTGAGCCTCGAGGATGGCAAACCACAAATCT 23893 Query 221894 CTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATG 221953 ||| ||| ||| || || | ||||| || | ||||||| ||| || | | Sbjct 23894 TGGGCCTTCATTGTCTTCCTGGCCAAGCCCTCAGTTTGTTCATACTTGGTGTACAACTCC 23953 Query 221954 TCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTC 222013 || || | ||| || | |||| | || ||| | | ||| || | || | Sbjct 23954 TCGAATTGTTCTCCCCAGACCTCAGCAAGTCCTTTAGCTTCGTTGGGGCAGAAGAGGGAC 24013 Query 222014 CAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAG 222073 |||| || || | || | || ||||||||| || |||| ||| || || | || Sbjct 24014 CAGTCACCATTTTCCTCCACACGCTTCATGAAGAGATCTGGGACCCAAAGTGCGTAGAAT 24073 Query 222074 AGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAA 222133 | |||| | || | ||||||| |||| |||| || | ||||| | || | | Sbjct 24074 AAGTCTCGCGCGCGATTCTCCTCCTTGCCGGTGTTCTTGCGAAGATCGAGGAAAGATATA 24133 Query 222134 ATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCC 222193 |||||||| ||||| || ||||| || || || | || || ||||||| ||| || Sbjct 24134 ATGTCAGCATGCCAGGGTTCCAGGTAAACTGCAAAGGCTCCCTTTCGCTTGCCGCCTCCT 24193 Query 222194 TGATCCAC 222201 || || || Sbjct 24194 TGGTCAAC 24201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928035694905280