Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_019917.1 Length=62952 Score E Sequences producing significant alignments: (Bits) Value seq4462 293 9e-75 seq8688 118 4e-22 seq5168 113 2e-20 >seq4462 Length=5303 Score = 293 bits (324), Expect = 9e-75 Identities = 261/327 (80%), Gaps = 0/327 (0%) Strand=Plus/Minus Query 9695 CATGGCATCCGTCAACAAAGTCATCCTCGTCGGCAATCTCGGTGCCGACCCGGAAACCCG 9754 |||||||||||| ||||| || |||||||||||||| ||||| ||||| |||||| || Sbjct 5098 CATGGCATCCGTGAACAAGGTGATCCTCGTCGGCAACCTCGGCGCCGATCCGGAAGTGCG 5039 Query 9755 CTATCTCCCGAGCGGCGACGCAATCTCCAACATCCGCCTCGCGACGACCGATCGTTACAA 9814 |||||| |||||||||||||| | | ||||| |||||||| |||||||| || ||||| Sbjct 5038 CTATCTGCCGAGCGGCGACGCCGTGGCGAACATTCGCCTCGCCACGACCGACCGCTACAA 4979 Query 9815 GGACAAAGCCAGCGGCGACTTCAAAGAAGTGACCGAGTGGCACCGCGTCGCCTTCTTCGG 9874 |||||| || |||||| ||||| ||| ||||||| ||||||||||| | |||||||| Sbjct 4978 GGACAAGGCGTCCGGCGAGTTCAAGGAAATGACCGAATGGCACCGCGTGTCGTTCTTCGG 4919 Query 9875 CCGCCTCGCCGAGATCGTCGACGAGCACCTGCGCAAGGGCGCATCGGTCTACATCGAGGG 9934 ||||| |||||||||||| ||| ||||| ||||| | ||||| || ||||| || Sbjct 4918 GCGCCTGGCCGAGATCGTCTCGGAGTACCTGAAGAAGGGTTCGTCGGTGTATATCGAAGG 4859 Query 9935 GCGCATCAAAACGCGGAAGTGGCAGGATCAATCCGGCCAGGATCGCTACACGACCGAGAT 9994 |||||| ||||| || ||||| | || |||| || |||||| |||| || || Sbjct 4858 CCGCATCCGCACGCGCAAATGGCAAGCGCAGGACGGCACCGACCGCTACTCGACGGAAAT 4799 Query 9995 CGTCGCCGACAAGATGCAGATGCTCGG 10021 |||||||||| ||||||||||||| || Sbjct 4798 CGTCGCCGACCAGATGCAGATGCTGGG 4772 >seq8688 Length=1745 Score = 118 bits (130), Expect = 4e-22 Identities = 164/226 (73%), Gaps = 8/226 (4%) Strand=Plus/Plus Query 3712 GCGCCGCGCGTCGAGATACGCGGCAAGGTCGGCAAGGTGGACGCCCTTCGCGCACTTCTG 3771 ||| ||| ||||| || | || || || | | ||| ||||||||||||| ||||| Sbjct 235 GCGGCGCTTGTCGATGTAATCAGCCAGATCTGTCAAGTGAACGCCCTTCGCGCCTTTCTG 294 Query 3772 CGAACGCTCCATCCGCACGATCGGCAAGGTGATGTCGCCGTCGAGTACCTTCCGCTGGAG 3831 ||| |||||| ||||||| ||||| | ||| ||||| || | ||| ||| | || Sbjct 295 CGACGACTCCATGCGCACGAGCGGCAGCGCGATCTCGCCAGCGGAAATCTTGCGCAGCAG 354 Query 3832 CTTTTCGGGA--GACAGGTGCGCGAAGTAGTCGCGGCACACCAGATCGAGGGGGATGACG 3889 | |||| | | || |||||||||||||||||||||| |||| ||||| || Sbjct 355 --TGTCGGCACCGTGAGCGGCGCGAAGTAGTCGCGGCACACGGTTTCGATCGGGATTAC- 411 Query 3890 GCACGGC--CGTCGTATTGGGCCATCAGGAGGAAAGCGGTGTTCAT 3933 | |||| ||| ||||||||||||||| ||||| |||| ||||| Sbjct 412 -CGCGGCCGCGTTGTATTGGGCCATCAGAAGGAAGACGGTATTCAT 456 >seq5168 Length=4284 Score = 113 bits (124), Expect = 2e-20 Identities = 83/96 (86%), Gaps = 2/96 (2%) Strand=Plus/Minus Query 7811 GGAGGCGTGGCAGAGTGGTTTAATGTACTGGATTTGAAATCCAGCGACGG--TAACCCGT 7868 ||||| |||||||||||||| |||| || || |||||| || |||| || |||||| | Sbjct 2985 GGAGGTGTGGCAGAGTGGTTGAATGCACCGGTCTTGAAAACCGGCGAAGGGGTAACCCTT 2926 Query 7869 CCGTGAGTTCGAATCTCACCGCCTCCGCCAGTTTTT 7904 ||||||||||||||||||||||||||||||||| || Sbjct 2925 CCGTGAGTTCGAATCTCACCGCCTCCGCCAGTTCTT 2890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 201150615488991