Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_019932.1 Length=29564 Score E Sequences producing significant alignments: (Bits) Value seq2320 545 4e-151 >seq2320 Length=11620 Score = 545 bits (604), Expect = 4e-151 Identities = 1482/2233 (66%), Gaps = 103/2233 (5%) Strand=Plus/Minus Query 10941 ATCACCGTATCCGCAACATCCTGAAGTCGCGCCAGATAGGTGCCACGTTCTACTTTGCCC 11000 |||| || | |||||||| || |||||||| ||||| || || |||| || || || | Sbjct 9581 ATCAGCGCACGCGCAACATTCTCAAGTCGCGGCAGATCGGCGCGACGTGGTATTTCGCAC 9522 Query 11001 GCGAGGCGCTGATTGACGCGCTGACCACCGGGCGCAACCAGATATTTTTGTCGGCCAGCA 11060 | ||||| ||| |||||| | || ||||| ||| | ||||| ||| |||||||||||| Sbjct 9521 GAGAGGCACTGGACGACGCGATCACGACCGGCCGCGATCAGATTTTTCTGTCGGCCAGCA 9462 Query 11061 AGGCGCAGGCGCACGTCTTTAAAAACTACATCATTGAC--TTTGCCCGCCAGGTGGACGT 11118 |||| || |||||||| || | | ||||| ||| | ||||| ||| ||| | || Sbjct 9461 AGGCACACGCGCACGTTTTCACGCAGTACAT--TTGCCAGTTTGCGCGCGAGGCCGCCGA 9404 Query 11119 TGAC---CTGAAGGGCGACCCGATTGTGCTGCCGAACGGTGCCCGCCTGATTTTTCTTGG 11175 || | || | ||||||||||| | ||||||| | || | ||||| || Sbjct 9403 TGTCGAGCTAACAGGCGACCCGATCATCTTGCCGAATGAGGCGACGTTACGCTTTCTAGG 9344 Query 11176 CACCAACGTGCGCACCGCGCAGAGCTACACCGGCAACCTGTATCTCGATGAATATTTCTG 11235 ||| |||| ||||||||| |||||||| |||||| | ||| |||| ||||| || || Sbjct 9343 CACGAACGCGCGCACCGCACAGAGCTATCACGGCAATTTCTATTTCGACGAATACTTTTG 9284 Query 11236 GA-TACCGAAATTCCAGGAGCTGCGAAAGGTCGCCAGCGGCATGTCGCTGCATAAAAAG- 11293 || | || | ||| | ||||| |||||||| |||||| || |||| ||||| Sbjct 9283 GACTGGCGGATTTCGCG-AGCTGAATAAGGTCGCGTCGGGCATGGCGATGCACAAAAAAA 9225 Query 11294 TGGCGCACCACCTACTTTTCCACGCCGTCGAGCCTGTCGCACTCCGCTTATCCGTTCTGG 11353 ||| | | ||||| || ||||||||||||||| | || |||| ||| | |||||| Sbjct 9224 TGGAGAAAAACCTATTTCTCCACGCCGTCGAGCATTGGACATGCCGCCTATACCTTCTGG 9165 Query 11354 TCGGGCGAGCTGTTCAACAAAGGGCGGCGCAGCAAAGCCGATCGCATCGAAATC--GACC 11411 ||||||| |||||| ||| || |||| || | ||||| ||| ||| ||| Sbjct 9164 AGTGGCGAGCACTTCAACCGAGGCCG-CGCA--AAGGTCGATC--ATCTGCATCTGGACG 9110 Query 11412 TGTCGCATACGCACCTGGCAAAAGGCGCGCTGTGCGGTGACGGCCAGTGGCGGCAGATTG 11471 | ||| | | || || ||| || |||| || | || ||||| ||||| | Sbjct 9109 TAACGCGCAAGGCGCTCGCCGGCGGCCGTCTCTGCGAGGATAGGCAATGGCGCCAGATCG 9050 Query 11472 TGACGGTTGAGGATGCGCTGACCGGCGGCTGTAACCTGTTTGACCTCGACCAGCTCCAGC 11531 |||| || |||||||| | ||||||| || ||||||| || ||| | |||| | | Sbjct 9049 TGACCGTCGAGGATGCCGTCGCCGGCGGGTGCGACCTGTTCGATATCGGCGAGCTACGTC 8990 Query 11532 TGGAATACAGCCCGTCGGAATACCAGAACCTGCTGATGTGTGAGTTTGTGGACGATGAGG 11591 | ||||||||| || ||||||| || ||| ||||||| ||||| | |||||| | Sbjct 8989 TTGAATACAGCGCGCAGGAATACGCCAATCTGTTGATGTGCCAGTTTATCGACGATACAG 8930 Query 11592 CGAGCGTGTTCCCGTTCGCCGAGCTGCAGACCTGCATGATCGACAGCCTGGAGGAATGGA 11651 || | |||||| |||| || | ||| |||||| |||| Sbjct 8929 CGTCGATTTTCCCGCTCGCGGATTTACAGCGTTGCATGGTCGAT---------------- 8886 Query 11652 GCGACTTTAACCCGTACCTGCCGCGCCCGTTTGATTACCGCCCGGTCTGGATTGGCTACG 11711 |||| ||||| || | || |||||| | ||| | ||||| | Sbjct 8885 ------------------TGCCCCGCCCTTTCGGCTATCGCCCGCTGTGGGTCGGCTATG 8844 Query 11712 ACCCGTCGCACACCGGCGACAGCGCAGGCTGTGCCGTTATCGCGCCGCCGCTGGTTGCGG 11771 |||| ||| | || ||| || |||| ||| |||| |||||| ||| | | Sbjct 8843 ACCCAGCGCTATCGGGTGACTCGGCCGGCTTGAGCGTCGTCGCACCGCCGGCGGTGCCTG 8784 Query 11772 GCGGCAAGTTTCGCGTGCTGGAGCGTCACCAGTGGCGGGGCATGGACTTTGCCGCGCAGG 11831 | |||||||||||||||||| | ||| ||||| |||||||| || | || |||| Sbjct 8783 GGGGCAAGTTTCGCGTGCTGCACAAGTGCCAATGGCGCGGCATGGATTTCGAGGCACAGG 8724 Query 11832 CAAAATCCATTGAGGACTTAACGAAAAAATACACCGTCGAGTATATCGGCG-TGGATGCG 11890 | | | || | | ||| | |||||| ||||| ||||| |||| | ||| || Sbjct 8723 CCGAGGCGATACGCGCGATCACGCAGCAATACAACGTCGCCTATAT-GGCGATCGATACG 8665 Query 11891 ACCGGCATCGGCCAGGGCGTTTTCCAGCTGGTTCGCCAGTTCTACCCG---GCGG-CGCG 11946 || ||||||||||||||||| | ||||| || | |||||||| ||| |||| |||| Sbjct 8664 ACAGGCATCGGCCAGGGCGTCTATCAGCTCGTCAGGCAGTTCTATCCGAACGCGGTCGCG 8605 Query 11947 TGAAATCCGTTACTCGCCGGAAGTGAAAA-CCGCGATGGTGCTGAA-GGCAAAAGACACC 12004 || || ||||| ||||| || |||| ||||||| || ||| | | Sbjct 8604 CTCAAC----TATTCGCCAGAAGTTAAGGGCCGCC-TGGTGCTCAAAGGCTT--GTCGGT 8552 Query 12005 -ATCAGCAGCGGACGCCTGGAATACGATGCGGGCCAGACCGACATTACGCAGTCTTTTAT 12063 ||| | | || || || |||| |||||| || ||| ||| | |||| || || || Sbjct 8551 GATCGGTAAGGGCCGGCTCGAATTCGATGCCGGATGGACAGACTTAGCGCAATCGTTCAT 8492 Query 12064 GGCAATCCGCAAAACCATGACCGCCAGCGGCAACCGCTCCACCTATGAGGCGAGCCGCAG 12123 ||| || |||||||||||||| || ||||| || ||| ||||| |||||||| | Sbjct 8491 GGCGATTCGCAAAACCATGACGGCGAGCGGAAAGAAAGTCACTTATGAAGCGAGCCGTAA 8432 Query 12124 CGAGGACGCCAGCCACGCCGACGTCGCCTGGGCAATCATGCACGCCCTGCTTAACGAACC 12183 |||| | | | ||||| ||| | |||||||| | ||||||| || |||||||| Sbjct 8431 CGAGCAAACAGGACACGCGGACCTTGCCTGGGCGTGCCTGCACGCGCTCGGCAACGAACC 8372 Query 12184 GCTGACCGCCGCCAGCGGCGGCGCTAACCCTTCAATTCTGGAATTTTACTGATGAGCAAA 12243 | | | || || || | | || | | || |||| || | ||||||| Sbjct 8371 GTTAGAAGGCGTCACCGCCAACAATACCGGCT---TTATGGAGTTCTCAAATTGAGCAAG 8315 Query 12244 CGCAGGGGCCGTAAGGCTTTCAACGCAAAAACGCAGCCCGT--AC--CGGCCGCCGCACC 12299 |||| | | || || ||| |||| | || || |||||||| | | Sbjct 8314 CGCAACATGC---ACGCCG-CACCGCC----CGCA--CTGTCGACTGCGGCCGCCCCGTC 8265 Query 12300 GCAGCAGCAG---GCGGAAGCGTTCACCTTTGGCGAGCCGACGCCGGTTATGGACAAGCG 12356 | || || | || || || |||||||| ||||| || ||| || |||||| ||| Sbjct 8264 GACGCCGCCGAGGGCCGAGGCCTTCACCTTCGGCGACGCGGTGCCAGTAATGGACC-GCG 8206 Query 12357 C-GATATCCTGGATTATGCCGA---GTGCATCGGTAACGGGCGCTGGTATGAGCCGCCGG 12412 | || || || || || | ||| ||| |||| ||| ||||| |||||||||| Sbjct 8205 CCGAGATTCTTGACTACGTCGAAACGTGG-TCGGC--CGGCAACTGGTTCGAGCCGCCGG 8149 Query 12413 TCAGCTTTCACGGGC-TGGCGAAAAGCCTGCGAGCGGCGGTGCATCACAGCTCGCCGATT 12471 | | | ||||| |||| |||| | || || | || |||||| ||||| |||| Sbjct 8148 TGT-CGTGGTCGGGCCTGGCTAAAACATTCCGCGCCGGCGTCCATCACGGCTCGGCGATC 8090 Query 12472 TATGTGAAGCGAAACATACTGGCGTCCACTTTTGTGCCGCACCCGATGATGAGCCAGCAG 12531 || | || || ||| | || || | || || | |||||| | || | | | | Sbjct 8089 TACTTCAAACGTAACGTGCTATCGGCGACGTTCATTCCGCACAGGTTGCTCACGCGCGAA 8030 Query 12532 GAGTTCAGCAAGTTTGCGCTGGACTATCTGGTGTTCGGCAATGCCTTTGCCGAGCTGCGC 12591 | |||| |||| ||||| || | || ||||||||||| | | |||||||| Sbjct 8029 GTGTTCGATAAGTGGGCGCTCGATTTCCTCACGTTCGGCAATGGGTATCTTGAGCTGCGA 7970 Query 12592 CGTAACGGCCTCGGTGAGCCG-TGGCGACTGGAAACCACACCCGCGAAGTTTACCCGCCG 12650 ||| | || || | |||| | ||| | || | || || |||| | ||||| Sbjct 7969 AAGAACCGGCTAGGCGGGCCGCTTGCGT-TCGAGCGTGCGCCAGCCAAGTACATGCGCCG 7911 Query 12651 GGGCGTGGAGGAAG-GCGTTTACTGGTTTGTGAATGACTGGAAAGAGCCGCATCCGTTCG 12709 | ||| | ||| || || || || | ||| | | | |||| ||||| Sbjct 7910 CGCGACGGACCTACAGCGCTT-CTATCAGGTCAACGGGTGGCAGGCGTCGCACGAGTTCG 7852 Query 12710 CCGCTGGCAGCGTCTTCCACCTCATTGAGCCGGATATTAACCAGGAGCTGTACGGCCTGC 12769 | || || | ||| ||| | || || ||||| ||||| |||||| |||| ||| ||| Sbjct 7851 CGGCCGGGACCGTGCATCACTTGATGGAACCGGACATTAATCAGGAGGTGTATGGCTTGC 7792 Query 12770 CGGAATATCTCAGCGCGTTAAACTCTGCCTGGCTGAATGAAGCGGCCACGCTGTTTCGCC 12829 | ||||||||| |||| | || | || ||| |||| || |||| ||||| ||||||| Sbjct 7791 CCGAATATCTCGGCGCCCTGCACGCGGCATGGTTGAACGAGTCGGCGACGCTATTTCGCC 7732 Query 12830 GCAAGTATTATCAGAACGGCGCACACGCAGGCTACATCCTGTATATGACCGACGCGGCGC 12889 | |||||| |||| || | ||||| |||| |||||||| ||||| || ||||||| Sbjct 7731 GGCGGTATTACGAGAATGGTTCGCACGCGGGCTTTATCCTGTACATGACGGATGCGGCGC 7672 Query 12890 AGA-GCAGCAGCGATATCGACCGGATGCGCCAGGCGATGCGCGACACGAAAGGCCTGGGT 12948 || ||| | |||| ||||| |||||| ||||| || ||| || || | || Sbjct 7671 AGTCGCAA-ACCGATGTCGACAACATGCGCGAGGCGTTGAAAAACAGCAAGGGGCCAGGC 7613 Query 12949 AACTTCCGCAATCTGTTTATGTACGCGCCGAACGGCAAGCCGGACGGAATTAAGATCCTG 13008 || ||||| || ||||| ||||||||||||||||||||| ||||| || || || | Sbjct 7612 AATTTCCGAAACCTGTTCATGTACGCGCCGAACGGCAAGAAAGACGGTATCCAGCTCATT 7553 Query 13009 CCGCTCAGCGAGGTGGCGACGAAAGATGATTTCTTTAACATCAAAAAGGCCAGCCGTGAC 13068 || | |||||| || ||||||| || || || || ||||| || | || || ||| Sbjct 7552 CCCGTTTCCGAGGTCACGGCGAAAGACGAGTTTTTCAATATCAAGAATGTCACGCGCGAC 7493 Query 13069 GACCTGCTGAGCGCGCACCGCGTGCCGCCGCAAATGATGGGGATTATCCCGGACGGTGCA 13128 ||| |||| ||||| ||| | || ||||| | |||||||| | ||| | | | Sbjct 7492 GACTTGCTCGCGGCGCATCGCATCCCCCCGCAGCTCATGGGGATCGTGCCGAGCAATACC 7433 Query 13129 GGCGGCTTTGGCG 13141 ||||| ||||||| Sbjct 7432 GGCGGATTTGGCG 7420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94405012022244