Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq22 123 2e-22 seq30454 122 6e-22 seq2782 114 8e-20 seq146 113 3e-19 seq59190 105 4e-17 >seq22 Length=338851 Score = 123 bits (136), Expect = 2e-22 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| ||||| ||||| ||||| || || || || || || |||| || || Sbjct 332207 ACGAAGGCGGAGCACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGGGT 332266 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || ||| || |||||||| ||||| ||||| ||||||||||| ||||| || ||||| Sbjct 332267 CCTTCCATCCTCGAGTTGCTTGCCAGCGAAAATGAGACGTTGTTGGTCAGGGGGGATTCC 332326 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAA 480729 |||||||| || ||||| |||||| || ||||| |||| | | | | | ||| Sbjct 332327 CTCCTTGTCCTGGATCTTAGTCTTGACACTCTCGATAGTGTCAGAGCTCTCGACCTCCAA 332386 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAAT 480766 ||||| || || || ||||||||||| |||||||| Sbjct 332387 -AGTAATGGTCTTTCCTGTGAGAGTCTTCACGAAAAT 332422 Score = 113 bits (124), Expect = 3e-19 Identities = 121/155 (78%), Gaps = 4/155 (3%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || ||||||||||| || || ||||| |||||||| ||||| || ||||||||||| Sbjct 331374 ATCCTCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGTTGGTCAGGGGGGATTCCTTCCTT 331433 Query 480677 GTCTTGAATCTTTTGTTTGACAGCT-TCAATAGTATCAGTG-TGTGAAGTTTCAAGGGTA 480734 |||||| |||||| || || ||| || || ||||||| | | | | | ||| ||| Sbjct 331434 GTCTTGGATCTTTGTCTTCAC-GCTCTCGATGGTATCAGAGCTCTCGACCTCCAA-GGTG 331491 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || |||||||| ||||| ||||| ||||| Sbjct 331492 ATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTG 331526 Score = 104 bits (114), Expect = 2e-16 Identities = 119/155 (77%), Gaps = 4/155 (3%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || || ||||| ||||| || ||||| |||||||| ||||| || ||||||||||| Sbjct 331938 ATCCTCGAGCTGCTTGCCAGCGAAGATAAGGCGTTGTTGGTCAGGGGGGATTCCTTCCTT 331997 Query 480677 GTCTTGAATCTTTTGTTTGACAGCT-TCAATAGTATCAGTG-TGTGAAGTTTCAAGGGTA 480734 |||||| |||||| || || ||| || || ||||||| | | | | | ||| || Sbjct 331998 GTCTTGGATCTTTGTCTTCAC-GCTCTCGATGGTATCAGAGCTCTCGACCTCCAA-CGTT 332055 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || ||||||||||| ||||| || || Sbjct 332056 ATAGTCTTGCCAGTGAGAGTCTTGACGAAGATCTG 332090 >seq30454 Length=461 Score = 122 bits (134), Expect = 6e-22 Identities = 119/151 (79%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || || ||||| |||||||| || | ||||||||| ||||| |||||||||||||| Sbjct 85 ATCCTCGAGCTGCTTGCCAGCAAAGATCAAACGTTGTTGGTCAGGGGGAATTCCTTCCTT 144 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAGGGTAA 480735 ||| |||||||| || || | || ||||| |||| | | | || |||||||||| Sbjct 145 GTCCTGAATCTTGGTCTTTACTGACTCGATAGTGTCAGAGCTCTCAA-CCTCAAGGGTAA 203 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAAT 480766 |||| ||||| ||||| ||||| ||||| || Sbjct 204 TAGTCTTACCAGTGAGGGTCTTGACGAAGAT 234 >seq2782 Length=10868 Score = 114 bits (126), Expect = 8e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| || || || | ||||| || ||||| || || ||||||| || || Sbjct 9149 ACGAAGGCGAAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGAAAGGGT 9208 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | || || ||||||||||||||||| || || |||||||| ||||| || ||||| Sbjct 9209 ACGTCCGTCCTCTAGTTGCTTTCCAGCAAAGATGAGGCGTTGTTGGTCAGGGGGGATTCC 9268 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAA 480729 ||||||||| || ||||| || || | || || ||||||| | | | | | ||| Sbjct 9269 TTCCTTGTCCTGGATCTTAGTCTTTACGGACTCGATGGTATCAGAGCTCTCGACCTCCAA 9328 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAAT 480766 |||||| || ||||| ||||| ||||| |||||||| Sbjct 9329 -GGTAATTGTCTTACCAGTGAGGGTCTTGACGAAAAT 9364 Score = 104 bits (114), Expect = 2e-16 Identities = 115/151 (76%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || || ||||| || ||||| || | ||||||||| ||||| || ||||||||||| Sbjct 8894 ATCCTCGAGCTGCTTGCCGGCAAAGATCAAACGTTGTTGGTCAGGGGGGATTCCTTCCTT 8953 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAGGGTAA 480735 ||| || ||||| || || | ||||| || |||| | | | | | ||| ||||| Sbjct 8954 GTCCTGGATCTTCGTCTTCACGGACTCAATGGTGTCAGAGCTCTCGACCTCCAA-GGTAA 9012 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAAT 480766 | |||||||| ||||| ||||| |||||||| Sbjct 9013 TGGTTTTACCAGTGAGGGTCTTGACGAAAAT 9043 Score = 100 bits (110), Expect = 2e-15 Identities = 128/174 (74%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 ||||| |||| || || | ||| || |||||||||||||| || || | ||||||| Sbjct 9495 TTATAGTCAGAGAGGGTACGTCCATCCTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGT 9554 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || ||||| || || ||||||||||| || |||||| ||||| | ||||| || || Sbjct 9555 TGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTTGTCTTGACGGACTCAATGGTGTCC 9614 Query 480714 GTG-TGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAAT 480766 | | | | | | ||| ||| || || || || ||||| ||||| |||||||| Sbjct 9615 GAGCTCTCCACCTCCAA-GGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAAAT 9667 Score = 96.9 bits (106), Expect = 2e-14 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || | ||||| || || || | || ||||||| || || Sbjct 9769 ACGTAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGAGAGGGT 9828 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| || |||||||| || ||||| |||||||||||||| ||||| |||||||| Sbjct 9829 ACGTCCATCCTCTAGTTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGGGGAATTCC 9888 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAA 480729 ||||||||| || ||||| || || | || || || || | | | | | || | Sbjct 9889 TTCCTTGTCCTGGATCTTGGTCTTCACGGACTCGATGGTGTCTGAGCTCTCCA-CCTCGA 9947 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| || || || || ||||| ||||| ||||| || || Sbjct 9948 GGGTGATGGTCTTGCCAGTGAGTGTCTTCACGAAGATCTG 9987 >seq146 Length=178297 Score = 113 bits (124), Expect = 3e-19 Identities = 121/155 (78%), Gaps = 4/155 (3%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || ||||||||||| || || || || |||||||| ||||| |||||||| ||||| Sbjct 157433 ATCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGTTGTTGGTCAGGGGGAATTCCCTCCTT 157492 Query 480677 GTCTTGAATCTTTTGTTTGACAGCT-TCAATAGTATCAGTG-TGTGAAGTTTCAAGGGTA 480734 |||||||||||| || || ||| ||||| || |||| | | | | ||| || ||| Sbjct 157493 GTCTTGAATCTTAGTCTTTAC-GCTCTCAATGGTGTCAGAGCTCTCGA-CTTCGAGAGTA 157550 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || ||||| ||||||||||| || || Sbjct 157551 ATAGTCTTGCCAGTGAGGGTCTTAACGAAGATCTG 157585 Score = 98.7 bits (108), Expect = 6e-15 Identities = 121/163 (74%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || |||||||| ||||| || || | ||||||||| ||||| || ||||||||||| Sbjct 156696 ATCCTCTAGTTGCTTGCCAGCGAAGATCAAACGTTGTTGGTCAGGGGGGATTCCTTCCTT 156755 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAGGGTAA 480735 ||| || ||||| ||||||| || || ||||| | | | | | ||||| || | Sbjct 156756 GTCCTGGATCTTGGTCTTGACAGACTCGATGGTATCGGAGCTCTCTA-CCTCAAGAGTGA 156814 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTGGAACGACAT 480778 | || || || ||||| ||||| ||||| || ||| | |||| Sbjct 156815 TGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGGTATTACAT 156857 Score = 93.3 bits (102), Expect = 3e-13 Identities = 116/154 (75%), Gaps = 4/154 (3%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || |||||||||||||| || || || || ||||| ||||| |||||||| |||||| Sbjct 157754 TCCTCGAGTTGCTTTCCAGCGAAGATGAGGCGCTGTTGGTCAGGGGGAATTCCCTCCTTG 157813 Query 480678 TCTTGAATCTTTTGTTTGACAGCT-TCAATAGTATCAGTG-TGTGAAGTTTCAAGGGTAA 480735 |||||||||||| ||||| ||| || || || |||| | | | | | ||| || | Sbjct 157814 TCTTGAATCTTTGTCTTGAC-GCTCTCGATGGTGTCAGAGCTCTCGACCTCCAA-CGTGA 157871 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || ||||| || || || ||||| || Sbjct 157872 TGGTCTTTCCAGTGAGTGTTTTCACAAAAATCTG 157905 Score = 89.7 bits (98), Expect = 3e-12 Identities = 112/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || |||||||| ||||||||||| | ||||||||| || || || ||||||||||| Sbjct 157110 ATCCTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGTTGGTCGGGGGGGATTCCTTCCTT 157169 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAGGGTAA 480735 ||| || ||||| ||||| | || || || || | | | | | ||||| || | Sbjct 157170 GTCCTGGATCTTGGTCTTGACGGACTCGATGGTGTCGGAGCTCTCGA-CCTCAAGAGTGA 157228 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAAT 480766 | || || || ||||| ||||| ||||| || Sbjct 157229 TGGTCTTTCCAGTGAGGGTCTTGACGAAGAT 157259 >seq59190 Length=243 Score = 105 bits (116), Expect = 4e-17 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || |||| ||||| | ||| || || ||||||||||| || || ||||| ||| Sbjct 210 TTGTAGTCAGAAAGAGTACGTCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGT 151 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || ||||| ||||| || |||||||| ||||| |||||| || ||||| ||| Sbjct 150 TGGTCGGGAGGGATTCCCTCTTTGTCTTGGATCTTGGTCTTGACACTCTCGATAGTGTCA 91 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | ||||||||||| || ||||| ||||| ||||| |||||||| || Sbjct 90 GAGGACTCGACCTCAAGGGTAATTGTCTTACCCGTGAGGGTCTTGACGAAAATCTG 35 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3265189986448676