Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_021774.1 Length=29742 Score E Sequences producing significant alignments: (Bits) Value seq2320 264 2e-66 >seq2320 Length=11620 Score = 264 bits (292), Expect = 2e-66 Identities = 640/970 (66%), Gaps = 52/970 (5%) Strand=Plus/Plus Query 1505 ACGCCGAGACCGAGGCCGGTCGCGTCAATGCCGATGTATTCGACGTTGTATTTCTCAGTG 1564 ||||| | |||| ||| |||| || || | || || |||||||||||| || ||| Sbjct 8645 ACGCCCTGGCCGATGCCTGTCGTATCGATCGCCATATAGGCGACGTTGTATTGCTGCGTG 8704 Query 1565 AGCCTGCGGATGCCTTCTGCCTGCGCGGCAAAGTCCATGCCTTTCCACTGGTGACGCTCC 1624 | | ||| || | || ||||| || | || |||||||| ||| ||| | | Sbjct 8705 ATCGCGCGTATCGCCTCGGCCTGTGCCTCGAAATCCATGCCGCGCCATTGGCACTTGTGC 8764 Query 1625 AGCATGCGAAACTTGCCACCCGAAACCACCGGCGGCGCGAGTACGACACATCCGGCACTG 1684 |||| |||||||||||| || | ||| ||||||| |||| ||| | ||||| | Sbjct 8765 AGCACGCGAAACTTGCCCCCAGGCACCGCCGGCGGTGCGACGACGCTCAAGCCGGCCGAG 8824 Query 1685 TCGCCAGTGTGGGACGGGTCGTAGCCAATCCAGACCGGGCGCGAGCCGAACGGGTGGTCG 1744 || || | | | ||||| ||||| | ||| | |||||| ||||||| ||| Sbjct 8825 TCACCCGATAGCGCTGGGTCATAGCCGACCCACAGCGGGCGATAGCCGAAAGGG------ 8878 Query 1745 GCGAACGGGGCGAAGTCCTCCCATGTTTCCATCACGTCGACCATGCAGCGCTGCAGCTCC 1804 |||||| | ||||||||||| ||||| | ||| Sbjct 8879 -----CGGGGCAA-----------------------TCGACCATGCAACGCTGTAAATCC 8910 Query 1805 TCGAACGGGAATACCGATGCCTTATCGTCGACAAACTCGCACATAAACAGGTTCTTAAAG 1864 ||| |||||| | ||| || ||||||||| ||||| |||||| ||||| || | Sbjct 8911 GCGAGCGGGAAAATCGACGCTGTATCGTCGATAAACTGGCACATCAACAGATTGGCGTAT 8970 Query 1865 TCCTCATCACTGTTTTCGCGTCTGAGCTGGTCGAGGTCGAACAGGGTGCAGCCACCGGCA 1924 |||| | |||| ||| | | |||| | ||| ||||||||| ||| || ||||| Sbjct 8971 TCCTGCGCGCTGTATTCAAGACGTAGCTCGCCGATATCGAACAGGTCGCACCCGCCGGCG 9030 Query 1925 AGGGCGTCCTCAATAGTGACAATCTGCCGCCACTGTCCGTCAGCGCAAAGAAGCCCACCG 1984 | ||| ||||| | || || ||||| ||||| || | || |||| ||| | || ||| Sbjct 9031 ACGGCATCCTCGACGGTCACGATCTGGCGCCATTGCCTATCCTCGCAGAGACGGCCGCCG 9090 Query 1985 GCGAGCGCGCTGTGACTGATGTCGATTTCGATGC-GGTCAGCAGCACTGGCGCGCCCCTT 2043 |||||||| || | | | ||| | ||||| | | | | | | ||||| || Sbjct 9091 GCGAGCGCCTTGCGCGTTACGTCCA----GATGCAGATGATCGACCTTTGCGCGGCCTCG 9146 Query 2044 GTTGAACAGCTCGCCAGACCAGAAGGGATAAGCGCCGTGCGCCAGCGTGGAAGGTGTCGA 2103 |||||| |||||||| |||||||| ||| ||| | || | | | || || || || Sbjct 9147 GTTGAAGTGCTCGCCACTCCAGAAGGTATAGGCGGCATGTCCAATGCTCGACGGCGTGGA 9206 Query 2104 AAAGTAAGTTGAGC-GCAGATGCTTCTGCGAGGCCATGCCCGATGCGACTTTGCGCAGCT 2162 || || ||| | || | || ||| ||||||||||| ||||| || |||| Sbjct 9207 GAAATAGGTTTTTCTCCATTTTTTTGTGCATCGCCATGCCCGACGCGACCTTATTCAGC- 9265 Query 2163 TCTGAAAATTCGGGA-TCCAGAATATTTCATCGACATACAGGTCGCCGTTATGGCTTTGT 2221 || |||| || | |||| || ||| |||| ||| | | ||||| || ||| ||| Sbjct 9266 TCGCGAAATCCGCCAGTCCAAAAGTATTCGTCGAAATAGAAATTGCCGTGATAGCTCTGT 9325 Query 2222 GCGGTGTTGGAATTGGTGCCGAGAAAAATCAGCTTTGCGCCGTTGTTGCCGATAACA--A 2279 |||||| | || ||||| ||||| | | | || | || || || | | Sbjct 9326 GCGGTGCGCGCGTTCGTGCCTAGAAAGCGTAACGTCGCCTCATT-----CGGCAAGATGA 9380 Query 2280 TCGGGTCGCCGGTCAGGTCGA---CGTCAACCAGTCGCGCAAACTGGATGATGTATTCCC 2336 |||||||||| || || |||| || | || |||||||||||| ||||| | | Sbjct 9381 TCGGGTCGCCTGTTAGCTCGACATCGGCGGCCTCGCGCGCAAACTGGCAAATGTACTGCG 9440 Query 2337 GGAACACGTAAGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGTTATGGCCGGTCTTGA 2396 ||| |||| || || | || |||||||||||||||||||| | |||||||| ||| Sbjct 9441 TGAAAACGTGCGCGTGTGCCTTGCTGGCCGACAGAAAAATCTGATCGCGGCCGGTCGTGA 9500 Query 2397 GCGCGCGCAGCAGTGCCTCGCGGGAAAAGTAGAACGTCGCGCCAATCTGGCGGGATTTGA 2456 |||| ||||||||| || | || || |||||||||| ||||| || || |||| Sbjct 9501 TCGCGTCGTCCAGTGCCTCTCGTGCGAAATACCACGTCGCGCCGATCTGCCGCGACTTGA 9560 Query 2457 GAATATCGCG 2466 |||| | ||| Sbjct 9561 GAATGTTGCG 9570 Score = 165 bits (182), Expect = 2e-36 Identities = 288/414 (70%), Gaps = 4/414 (1%) Strand=Plus/Plus Query 300 CCCATGAGCTGGAACGGTACGCGGTGCGCATCCATCAGGTCGGCGGCGC-TGGCTTTTTT 358 ||||||||||| || | ||| ||||| | | || |||| || ||| || | || || Sbjct 7452 CCCATGAGCTGCGGGGGGATGCGATGCGCCGCGAGCAAGTCGTCG-CGCGTGACATTCTT 7510 Query 359 GATGTTGAAAAAGTCATCCTTTGTGGCGACCTCGCTCAATGGCACGATTTTTATGCCGTC 418 ||| |||||||| || || || | | ||||||| | || | || | || ||||| Sbjct 7511 GATATTGAAAAACTCGTCTTTCGCCGTGACCTCGGAAACGGGAATGAGCTGGATACCGTC 7570 Query 419 CGGTTTCCCGTTCGGTGAGTAGAAAAACAGGTTTTTAAAGTTGCCGAGCCCTTTAGAGTT 478 || |||||||| | ||| | ||||||||| || ||||| |||| || ||| Sbjct 7571 TTTCTTGCCGTTCGGCGCGTACATGAACAGGTTTCGGAAATTGCCTGGCCCCTTGCTGTT 7630 Query 479 ACGCATTGCATCGCGCAGCGATTCGACGTCAGTC-GCGCTTTGCGCCGGGTCAGTCACAT 537 || || ||||||| ||||| || || ||| | |||||| || |||| | Sbjct 7631 TTTCAACGCCTCGCGCATGTTGTCGACATCGGTTTGCGACT-GCGCCGCATCCGTCATGT 7689 Query 538 ACATGATGTAACCTGCGTGCGCGCCGTTCTGGTAATACTTGCGGCGGAACAGCGTCGCGG 597 ||| ||| | || ||||||| || |||| ||||||| ||||| || |||||||| | Sbjct 7690 ACAGGATAAAGCCCGCGTGCGAACCATTCTCGTAATACCGCCGGCGAAATAGCGTCGCCG 7749 Query 598 ATTCATTCAGCCAGGCGGAATTAAGTGCGCTGAGATATTCAGGCAGGCCGTAAATCTCCT 657 | || |||| ||| || | | || |||| ||||||||| |||| ||| || | ||||| Sbjct 7750 ACTCGTTCAACCATGCCGCGTGCAGGGCGCCGAGATATTCGGGCAAGCCATACACCTCCT 7809 Query 658 GATTAATATCAGGCTCCAGCAGGTGGAACACGGTATCGGGTGCGAATTCATGCG 711 ||||||| || || |||| || ||| |||||| ||| ||||| || |||| Sbjct 7810 GATTAATGTCCGGTTCCATCAAGTGATGCACGGTCCCGGCCGCGAACTCGTGCG 7863 Score = 91.5 bits (100), Expect = 3e-14 Identities = 146/204 (72%), Gaps = 8/204 (4%) Strand=Plus/Plus Query 897 TGCGGAATGTAGGTGCTCGCGAGCACGTTGCGTTTAACGTAAATCGGTGAGCTGTGATGC 956 ||||||||| | || || |||||||| ||||| | ||| |||| |||| |||||| Sbjct 8049 TGCGGAATGAACGTCGCCGATAGCACGTTACGTTTGAAGTAGATCGCCGAGCCGTGATGG 8108 Query 957 ACTGCAGAGCGCAGGCTTTTTGCCAGCCCGGAGAAGCTGACCGGCGGCTCGTACCATTTG 1016 || | | ||| | |||| ||||| || || | |||||||||||| |||| ||| Sbjct 8109 ACGCCGGCGCGGAATGTTTTAGCCAGGCCCGACCACGACACCGGCGGCTCGAACCAGTTG 8168 Query 1017 CCGTTACTGATGCAC---TCGACGTAATCCAGAATATC-GCGCTTATCGAGCACCGGCAC 1072 ||| | || ||| |||||||| || ||||| || |||| || | || ||||| Sbjct 8169 CCG--GCCGA-CCACGTTTCGACGTAGTCAAGAATCTCGGCGC-GGTCCATTACTGGCAC 8224 Query 1073 CGGCTCACCGAAGGTGAATGCCTC 1096 || || ||||||||||| ||||| Sbjct 8225 CGCGTCGCCGAAGGTGAAGGCCTC 8248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94974140659376