Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq26606 158 1e-32 seq11685 145 9e-29 seq7481 136 5e-26 seq3334 118 1e-20 seq612 102 1e-15 seq9495 100 3e-15 seq11 98.7 1e-14 seq1429 96.9 4e-14 seq4906 95.1 1e-13 seq359 95.1 1e-13 seq1707 86.0 8e-11 >seq26606 Length=519 Score = 158 bits (174), Expect = 1e-32 Identities = 165/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| | | |||||| || |||||||||||||| ||||| | || Sbjct 230 GCTTGGCGAGCTCTCCGGGAAGGATCAGTCGGACGGCGGTCTGGATTTCGCGAGACGAGA 289 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 ||||| ||||||||| ||||||||||||| ||||| | ||||||| |||| | Sbjct 290 TCGTGGAGCGCTTGTTGTAGTGCGCCAGACGAGATGCCTCAGCAGCGATGCGCTCGAAGA 349 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||| ||||| ||||||||||||| ||||||| || ||||| || |||||||| Sbjct 350 CGTCATTGACGAACGAGTTCATGATGGACATCGCTTTCGAGGAGACACCAGTGTCGGGGT 409 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||||||||||||||| ||||||| | |||||| Sbjct 410 GCACCTGCTTGAGCACACGGTAGATGTAGACCGAGTA 446 >seq11685 Length=1128 Score = 145 bits (160), Expect = 9e-29 Identities = 211/298 (71%), Gaps = 0/298 (0%) Strand=Plus/Minus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||||||||||||||| || | |||||| ||||| || || | | |||||| ||| | Sbjct 873 CCGAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAGAATGCGCGCGCCTCTGGCACCT 814 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 || || ||||||| || || || |||||| || |||||||||||| |||||| Sbjct 813 TCACGTCGCTCATGAAGCGCTGCGCGAGATTCTCGATGACTATGCCGTCGCTGCCGGCGA 754 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGA 869810 | || || || || |||||||| ||||| ||||| ||||| | |||| |||||| Sbjct 753 AGAAGGCGAGCACATGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGCGTTGCCCAGTCCT 694 Query 869811 CGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 ||||| || ||||| | ||||||| | |||||||| || ||| || |||| Sbjct 693 TCATGTCGTTGCCCAGGTCGATCTCCTCGACCGTCCAGATGCAGCTCTCCTGCTCCTTGT 634 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTC 869928 || | ||| | | ||||| |||| |||||||| || ||||| ||||| || Sbjct 633 ACTTGCGCCAGATGTCATGGTACTGGATTGGGAAGAGAACGTAGCGGAACGGGTTCTC 576 Score = 96.9 bits (106), Expect = 4e-14 Identities = 124/170 (73%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 869202 CGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGA 869261 ||||||| || | || || ||||| || ||||||||||| ||||| || | ||||||| Sbjct 1128 CGTTGCTGAACGTCAGCCCTGGCATCAGACCGCGCTTCTTCAGCCAGAACAGTGCGCAGA 1069 Query 869262 AACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGG 869321 | || || || || |||||||| || |||||||||||||| |||||||| |||| Sbjct 1068 ACGACCCGGAAAAGAAAATGCCCTCCACCGCGGCAAAGCCGATCAGCCGCTCCTGAAAG- 1010 Query 869322 TGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTC 869371 ||| | |||| ||||||| || ||||| || ||||| ||| Sbjct 1009 -CTCGCGCTGCTCC----CGATCCACCGCACGGCCCACTCCGCCTTCTTC 965 >seq7481 Length=2307 Score = 136 bits (150), Expect = 5e-26 Identities = 236/336 (70%), Gaps = 9/336 (3%) Strand=Plus/Minus Query 1726708 GGCGTCGAGTGCCGTCGCCACGCTCCCGTCGGTGCCGTTCTTGAAGCCGAT-GGCCAGCG 1726766 ||||||| || || ||||| |||||||||||||||||||||||||| || || || Sbjct 1100 GGCGTCGGCGGCGATCTGCACGCCGCCGTCGGTGCCGTTCTTGAAGCCGATCGGGCA-CG 1042 Query 1726767 GCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCGGTCGTGCGCGCGCCCACGGCGC 1726826 || |||| || | || ||||| |||||| ||||||||||||||||| | |||| Sbjct 1041 AAAGGCCCGAGGCGAGCTGCCGGTGGCTCTGGCTTTCGGTCGTGCGCGCGCCGATCGCGC 982 Query 1726827 CCCACGCCACCAGGTCTGCCA--AATAAGGGGCCACCAGAGGACTGAGAAACTCGACGGC 1726884 |||||||||| ||||| || | ||| |||| ||| || ||| || || ||| Sbjct 981 CCCACGCCACGAGGTCGGCAATGAATTGCGGGC--TCAGCAGATCGAGGAATTCCGTGGC 924 Query 1726885 CACGGGCTGATCGACGGCGACGACGAGATCGCGCAACAGGCGGCGCGACGCCGTCAGGCC 1726944 | |||| | ||| ||| || || ||| ||| ||| |||||| || |||||| Sbjct 923 CGTGGGCAGGCCGA--GCG-CGTTGATGTCGAGCAGCAGCTGGCGCGCGGCGCGCAGGCC 867 Query 1726945 GTCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGAC 1727004 ||| | |||| | ||||| || |||||| || ||||||||| || || Sbjct 866 CTCGTTGATGCGGAAGCTGCCGTCCAGACGCGGGTCGTTGATATAGCCCTTCCAGCCCAC 807 Query 1727005 GGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGAC 1727040 || || |||||||| |||| || |||||||||| Sbjct 806 CGTGGTTCGCGGCTTCTCGAAGTACACGCGCATGAC 771 >seq3334 Length=7651 Score = 118 bits (130), Expect = 1e-20 Identities = 148/202 (73%), Gaps = 6/202 (3%) Strand=Plus/Plus Query 1547280 GAACCGCGTCACGATGCCAAAGTTGCCGCCGCCGGCGCCGCGCAGCGCCCAAAAGAGGTC 1547339 |||| |||||| | ||| ||||||||||||||| ||||| |||||||| |||||||| Sbjct 3459 GAACATCGTCACCACGCCGAAGTTGCCGCCGCCG---CCGCGAAGCGCCCAGAAGAGGTC 3515 Query 1547340 GGCGTTGGGGCCGTCGGCGTCAGCGCGCACGAGGCGCCCATCGGCGAGAACGACCTCGGC 1547399 |||||| | || ||| ||||||| || || |||||| ||||| ||||| Sbjct 3516 GGCGTT---TTCTTCCGCGCTCGCGCGCAGCAGATTGCCGTCGGCGGTCACGACGTCGGC 3572 Query 1547400 TGCCACGAGATTGTCGCACGTGAGACCCCAACGGCGCATCAGGAAGCCGACGCCGCCGCC 1547459 || ||||| |||||| || | || | || || |||| |||||| ||||||||| Sbjct 3573 GGCGACGAGGTTGTCGACCGACATGCCGAAGCGCCGGCTCAGCCAGCCGAAGCCGCCGCC 3632 Query 1547460 CTGCGTAAGGCCGGCAATGCCC 1547481 | |||| || ||||| | |||| Sbjct 3633 CAGCGTGAGACCGGCCACGCCC 3654 >seq612 Length=73199 Score = 102 bits (112), Expect = 1e-15 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 1628407 GGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCACACGTC 1628466 || || ||||| |||||||| ||| | || | || ||| ||||| || | Sbjct 23999 GGGCAGAAGAGGGACCAGTCACCATTTTCCTCCACACGCTTCATGAAGAGATCTGGGACC 24058 Query 1628467 CACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGG 1628526 || |||||||| || | ||| ||||| || ||||||||||||||| |||||| || Sbjct 24059 CAAAGTGCGTAGAATAAGTCTCGCGCGCGATTCTCCTCCTTGCCGGTGTTCTTGCGAAGA 24118 Query 1628527 TCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTG 1628586 ||||| | | |||||| || ||||| || |||||||| |||||||| ||||| Sbjct 24119 TCGAGGAAAGATATAATGTCAGCATGCCAGGGTTCCAGGTAAACTGCAAAGGCTCCCTTT 24178 Query 1628587 CGCTTGCCGCCGCC 1628600 ||||||||||| || Sbjct 24179 CGCTTGCCGCCTCC 24192 Score = 86.0 bits (94), Expect = 8e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 1630081 GCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGACTCGCCGTTGGTGCCC 1630140 || |||||||| || || || ||||| |||||||| |||||||| ||||||||| || Sbjct 24467 GCAGTGTCGTTGAACACACGAAGCATAGGCACGAGACCGTTGGATGAGCCGTTGGTACCG 24526 Query 1630141 GCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCGATGCCGCCGGCCGAC 1630200 | ||||| | ||| || | || || | || | || || || || || | Sbjct 24527 CGAATGTAGGAATGAGAGGCTCGGATTTTATGTACAGCGAGACCTATCCCTCCAGCACTC 24586 Query 1630201 TTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGGCCTTC 1630260 ||||| || | || ||||| || ||||||||||| |||||||| || |||||| | | Sbjct 24587 TTGGAAATCAAGGCACACTGCTTAAGCGTGTCGTAAATGCCCTCAATACTGTCGGCTTGC 24646 Query 1630261 ATGTC 1630265 || || Sbjct 24647 ATTTC 24651 >seq9495 Length=1495 Score = 100 bits (110), Expect = 3e-15 Identities = 141/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 732350 CGAGGTGCACCCGCTGCTCATGCTCGGGGCCTGCGCGTCCATCATCCCGTTCTCCAACCA 732409 |||| || ||||| | | || ||||| ||||| ||||| ||||||| | ||||||| Sbjct 1474 CGAGATGGACCCGTCGATGATTCTCGGCATTTGCGCCTCCATTATCCCGTACCCCAACCA 1415 Query 732410 CAACCAGGCGCCGCGCAACATCTACCAGACGGCCATGGGCAAGCAGAGCAAGGCCGTCGT 732469 ||||||| | |||||||||| ||||||| | |||||||| |||||| || || | || | Sbjct 1414 CAACCAGTCCCCGCGCAACACCTACCAGTCCGCCATGGGTAAGCAGGCCATGGGCATC-T 1356 Query 732470 GTCGCTC-AACGCCGACCACGC-CATCGACACGGTGTCGCACGCCCTGTGCTACCCGCAG 732527 ||| ||| | | || || ||| ||||| | |||| ||| | ||||||||| Sbjct 1355 ACGCCTCGAACTTC-AACATGCGCATGGACACCACCGCCCACGTCCTCTTCTACCCGCAA 1297 Query 732528 GTGCCGCTGGTGC 732540 |||||||||| Sbjct 1296 AAACCGCTGGTGC 1284 Score = 89.7 bits (98), Expect = 6e-12 Identities = 271/416 (65%), Gaps = 14/416 (3%) Strand=Plus/Minus Query 733092 GGCGACAAACTGTCGTCGCGCCACGGCCAAAAGGGCACCGTGGGCAGCGTGCG-CTCCAC 733150 ||||||||| | | |||||||| |||||||||||| |||| | | | ||| Sbjct 771 GGCGACAAATTCTGCAGCCGCCACGGACAAAAGGGCACCAACGGCATCCAGTTTCGCCAG 712 Query 733151 CGAGGACATGCCCTGGTCGCCGCGCGGCGGCGCCACGCCCGACATCGTGATCAACCCGCA 733210 ||||||||||||| || | |||| |||| | ||| ||| || | |||||||| || Sbjct 711 -GAGGACATGCCCT--TCAAC-CGCGACGGCATCGTGCCGGACCTCATCATCAACCCCCA 656 Query 733211 CGCCATCCCGTCGCGCATGACCATGGGCAAGATGCTCGAGGCCCTCCTGGGCAAGGTGGC 733270 |||||| || || |||||||| ||| | | || |||| | ||| ||||||||||| Sbjct 655 CGCCATTCCCTCCCGCATGACAGTGGCCCACCTGATCGAAACGCTCGCCGGCAAGGTGGC 596 Query 733271 CTGCCGCGAGGGCTACATCGGCGACGGCACGCCCTTTGGCGGCGTCACCNNNNNNNNNNN 733330 ||| | ||||| | | | ||| ||||| || || |||| Sbjct 595 GTGCTACAAGGGCGGCGAGGTCTACGCAACGCCGTTCTGCTCCGTCGTTGTGGACGACTT 536 Query 733331 NNNNNNNGAGTT---GGCCCGCCACGGGTGCGAGCGCTACGGCAAGGAGGTGCTCTACCA 733387 | || |||| || ||| |||| |||||||| ||| |||||| | Sbjct 535 TGGCAAGGCTTTACATGCCCTCC---GGTCGCAGCGGTACGGCAACGAGTGCCTCTACAA 479 Query 733388 CCCGCACACCGGCGAGCCCATGGCGGCGTTGATCTTC-TCGGCGCCGGTCTACTACCAGG 733446 ||||||||| ||| ||| |||||||| ||||| || || ||||||| Sbjct 478 TGGGCACACCGGTCTGCCGCTGGACCATCTGATCTTCTTCGGCCCC--ACTTCTACCAGC 421 Query 733447 CCCTCCGGCACGTGGCCATCGACAAGATCCACGCGCGCCCGCGCGGTCCCGTGCAG 733502 ||| |||| | || |||||||||||||| ||||| ||||| || ||||| Sbjct 420 GCCTGAAGCACTTATCCGGTGACAAGATCCACGCACGCCCACGCGGGCCGCTGCAG 365 >seq11 Length=383883 Score = 98.7 bits (108), Expect = 1e-14 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 ||| |||||| |||| |||||| ||||| ||| ||||||| || ||||||||||| Sbjct 311982 CGTGGACAAAGGAGTCCATGACAACCATCGCCTTCTTGGAGACACCAGTGTCGGGGTGCA 312041 Query 1254526 CCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGAGGTGTAGTTTTTCTT 1254577 | ||||||||||||||||||||| | | ||||| || | |||||| |||| Sbjct 312042 CTTGCTTGAGCACCTTGTAGATGTAGGTAGAGTAGGAAGAGTAGTTGCTCTT 312093 >seq1429 Length=23345 Score = 96.9 bits (106), Expect = 4e-14 Identities = 209/311 (67%), Gaps = 4/311 (1%) Strand=Plus/Plus Query 868693 CTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAA 868752 ||| || |||||| ||| || | |||||||||||| ||||| | | |||||| | Sbjct 7787 CTTTGCATACTCGGACACACGGCTCTCGAAAAAGTTCGTCTTTCTGGACAACGAGATGAG 7846 Query 868753 CTCCATCCACGGGAACGGGTTG--GGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||||| ||| ||||| ||||| ||||| ||| | || |||| | Sbjct 7847 TTCCATCCAGTCGAATGGGTTTTTGGCGT--TGTAGACCTTGGGGTGCCCAAGCGCCAGT 7904 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 | || || || ||||| || |||||||| |||| |||| |||||||||| || || Sbjct 7905 AAAAGTCGATCAGCGACGAATTCGATGTATTGGCTCATGGCTTCGGCGTTCATTCCAATC 7964 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || ||||| || | ||| | | |||||||||||| | | || || || ||| Sbjct 7965 AGGGCGACCGGTAGGGCCTCTGTGATAAACTCTTTCTCTACGGCTACCGCATCATAGATA 8024 Query 868931 ATCTGCCTGGGCACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGCA 868990 ||| | | || | | |||||| |||||| | ||| || ||||| || Sbjct 8025 ATCGATTTTAGGGTCTCTGGTTTCAGTTTGTTGGAGAGCATAGAGTAAAGGAGGCAAGCG 8084 Query 868991 AAGTCGCAGTG 869001 ||||||||||| Sbjct 8085 AAGTCGCAGTG 8095 >seq4906 Length=4638 Score = 95.1 bits (104), Expect = 1e-13 Identities = 236/344 (69%), Gaps = 16/344 (5%) Strand=Plus/Plus Query 1632416 GGCTGTCTGATCGGGTGGGCGCGCCAGGGCGTGCTTCTGCTCAACACGTGCCTCACGGTC 1632475 |||||||| || |||||||||||||||||||| ||||| |||||| || || ||| Sbjct 3761 GGCTGTCTCGACGCCTGGGCGCGCCAGGGCGTGCTGCTGCTGAACACGGTGCTGACCGTC 3820 Query 1632476 GAG-GCCGGACATCCGGGGTCGCACCGCG-ACCGCGGCTGGGAGCCCTTTACCGACGCGG 1632533 ||| || || ||| | || |||| | ||||||||||||| || |||||| || Sbjct 3821 GAGCGCGCGAGCGCCGCG--AGCCACGCGAAGCGCGGCTGGGAGCGCTGCACCGACACGC 3878 Query 1632534 TGATCTCGCTCGTGAGCAGGCG-CTCGACGCACCCGGTGGTCTTTATGCTCTGGGGC-CG 1632591 ||||| || | | ||| | ||| ||||| | || || ||||| |||||| || Sbjct 3879 TGATCCAGCAACTCGCCGCGCGCCACGA-GCACC---TCGTGTTCATGCTGTGGGGCGCG 3934 Query 1632592 CGACGCCCAGAGCAAGCGCAAGTTGATCGACCAGAACCGGCACAAGATCCTCGAGGCCGC 1632651 | |||| |||| |||||| | || || | | | ||| | || || || | Sbjct 3935 C-ACGCGCAGAACAAGCGTGCGCTGCTC-TCGGGTGC--GCATTGCGTGCTGGAAGCGCC 3990 Query 1632652 CCACCCGTCGCCCAAGTCGGC-CACCAGCGGCTTTTTCGGCTGCCGCCACTTTTCGCAGG 1632710 || |||||||| || || || | |||||||| ||||||| | || || |||||| Sbjct 3991 GCATCCGTCGCCGCTTTCCGCGCATC-GCGGCTTTCTCGGCTGTGGGCATTTCGCGCAGG 4049 Query 1632711 CCAACGCCTTTCTCGCCAAGAACCGCCGCCCGCGCATCGACTGG 1632754 |||||| || ||| | || |||||| || ||||||||| Sbjct 4050 CCAACGACTATCTGCAGGCGCACGGCCGCCAGCCGATCGACTGG 4093 >seq359 Length=109469 Score = 95.1 bits (104), Expect = 1e-13 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || ||||| | |||||||| || || | || | |||||| | ||||||||| Sbjct 1906 GCTGCTAACTATTTGGACATCAAACCCCTCTTGGACGTAACTTGCAAGACCGTGGCCAAC 1847 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||||||| | || ||||| |||||||||||||| ||||| ||| ||| Sbjct 1846 ATGATCAAGGGCAAGACACCAGAGGAAATCCGCAAGACCTTCAACATTAAGAACG 1792 >seq1707 Length=16571 Score = 86.0 bits (94), Expect = 8e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 18088 GTCACCACCTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCG 18147 ||||||||||| ||||| || ||||| ||| | | |||||| ||||||||||| ||| Sbjct 15412 GTCACCACCTTCGGCGAATCCCACGGCCCGGCCATTGGCTGCGTCATCGACGGCTGCCCG 15471 Query 18148 CCGTGCATGCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGC 18207 || ||||| | || |||| |||||||||||| | |||| || ||||| || ||| Sbjct 15472 CCCGGCATGGCGCTCACCGAAGCCGACATCCAGATCGACCTGGACCGCCGCCGCCCCGGC 15531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6101420358435779