Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq30454 129 5e-25 seq146 127 2e-24 seq2782 123 2e-23 seq59190 114 1e-20 seq6776 114 1e-20 seq22 109 5e-19 seq62579 84.2 2e-11 >seq30454 Length=461 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24705 TGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCG 24764 || ||||||| | || || || || ||||| |||||||| || || || || | | | Sbjct 239 TGTAGATCTTCGTCAAGACCCTCACTGGTAAGACTATTACCCTTGAGGTTGAGAGCTCTG 180 Query 24765 ACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAAC 24824 |||| | || | ||||| ||||| || ||||| |||||||| || || || |||| Sbjct 179 ACACTATCGAGTCAGTAAAGACCAAGATTCAGGACAAGGAAGGAATTCCCCCTGACCAAC 120 Query 24825 AACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACA 24884 |||||||||||||||| || || ||||| |||||| | | | | || || || || | Sbjct 119 AACGTTTGATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTCTCCGACTACAATA 60 Query 24885 TTCAAAAGGAATCGACACTACACTTGGTG 24913 |||||||||| || || || ||||||||| Sbjct 59 TTCAAAAGGAGTCCACCCTTCACTTGGTG 31 >seq146 Length=178297 Score = 127 bits (140), Expect = 2e-24 Identities = 163/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 24707 CAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGAC 24766 |||||||| |||| || || || || || |||||||| |||||||| || | | ||| Sbjct 157585 CAGATCTTCGTTAAGACCCTCACTGGCAAGACTATTACTCTCGAAGTCGAGAGCTCTGAC 157526 Query 24767 ACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAA 24826 || | || | ||||| ||||| |||||||| || ||||| || || || |||||| Sbjct 157525 ACCATTGAGAGCGTAAAGACTAAGATTCAAGACAAGGAGGGAATTCCCCCTGACCAACAA 157466 Query 24827 CGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATT 24886 || | ||||| ||||| || || || |||||| | | | | || || || |||||| Sbjct 157465 CGCCTCATCTTCGCCGGAAAGCAACTCGAGGATGGACGCACCCTCTCCGACTACAACATT 157406 Query 24887 CAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 |||||||| || || || ||||||||| | || | || || ||| Sbjct 157405 CAAAAGGAGTCCACCCTCCACTTGGTGCTCCGCCTTCGTGGTGGC 157361 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 24708 AGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACA 24767 ||||||| | || || || || || || || || || || || || || | |||||| Sbjct 157261 AGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACTCTTGAGGTCGAGAGCTCCGACA 157202 Query 24768 CAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAAC 24827 | | || | || || |||||||| ||||| |||||||| || ||||| ||||||| Sbjct 157201 CCATCGAGTCCGTCAAGACCAAGATCCAGGACAAGGAAGGAATCCCCCCCGACCAACAAC 157142 Query 24828 GTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTC 24887 ||||||| ||||| || || || || |||||| | | | | || || || ||||| | Sbjct 157141 GTTTGATTTTTGCTGGCAAGCAACTCGAGGATGGACGCACCCTCTCCGACTACAACATCC 157082 Query 24888 AAAAGGAATCGACACTACACTTGGTG 24913 ||||||| || || || ||||||||| Sbjct 157081 AAAAGGAGTCCACCCTCCACTTGGTG 157056 Score = 111 bits (122), Expect = 1e-19 Identities = 166/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 24707 CAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGAC 24766 |||||||| | || || || || || || || || || || || ||||| | |||| Sbjct 156848 CAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACTCTTGAGGTAGAGAGCTCCGAT 156789 Query 24767 ACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAA 24826 || | || | || || |||||||| ||||| |||||||| || || || |||||| Sbjct 156788 ACCATCGAGTCTGTCAAGACCAAGATCCAGGACAAGGAAGGAATCCCCCCTGACCAACAA 156729 Query 24827 CGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATT 24886 ||||||||||| || || || || || |||||| | | | | || || || ||||| Sbjct 156728 CGTTTGATCTTCGCTGGCAAGCAACTAGAGGATGGACGCACCCTCTCCGACTACAACATC 156669 Query 24887 CAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGC 24941 || ||||| || || || ||||||||| | || | || || ||| |||| ||| Sbjct 156668 CAGAAGGAGTCCACCCTCCACTTGGTGCTCCGCCTCCGTGGTGGC--AACTAAGC 156616 >seq2782 Length=10868 Score = 123 bits (136), Expect = 2e-23 Identities = 169/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 24705 TGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCG 24764 || |||| || | || || || || |||||||| ||||| | || || || | | | Sbjct 9048 TGTAGATTTTCGTCAAGACCCTCACTGGTAAAACCATTACCTTGGAGGTCGAGAGCTCTG 8989 Query 24765 ACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAAC 24824 |||| | || | || || |||||||| ||||| |||||||| || || || |||| Sbjct 8988 ACACCATTGAGTCCGTGAAGACGAAGATCCAGGACAAGGAAGGAATCCCCCCTGACCAAC 8929 Query 24825 AACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACA 24884 ||||||||||||||||||| || ||||| |||||| | | | | || || || |||| Sbjct 8928 AACGTTTGATCTTTGCCGGCAAGCAGCTCGAGGATGGACGCACCCTCTCCGACTACAACA 8869 Query 24885 TTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGA 24939 | || ||||| || || || ||||||||| | || | || || ||| |||||| Sbjct 8868 TCCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGCCTCCGTGGTGGC--AACTGA 8816 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || ||||| || || | | Sbjct 9990 ATGCAGATCTTCGTGAAGACACTCACTGGCAAGACCATCACCCTCGAGGTGGAGAGCTCA 9931 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| |||||||| || || || ||| Sbjct 9930 GACACCATCGAGTCCGTGAAGACCAAGATCCAGGACAAGGAAGGAATTCCCCCTGACCAA 9871 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | ||||||||||| || || || |||||| | | | | || ||||| ||| Sbjct 9870 CAACGTCTTATCTTTGCCGGCAAGCAACTAGAGGATGGACGTACCCTCTCTGATTACAAC 9811 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||||||||| | || | || || ||| Sbjct 9810 ATCCAGAAGGAGTCCACCCTTCACTTGGTGCTCCGTCTACGTGGTGGC 9763 Score = 102 bits (112), Expect = 7e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 24787 AAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAA 24846 ||||||||| ||||| ||||| || || || || ||||||||||||||||| || || || Sbjct 9590 AAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAACAACGTTTGATCTTCGCTGGAAA 9531 Query 24847 ACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACA 24906 || || |||||| | | | | || || |||||||| || ||||| || || || || Sbjct 9530 GCAACTCGAGGATGGACGTACCCTCTCTGACTATAACATCCAGAAGGAGTCCACCCTTCA 9471 Query 24907 CTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||| | || | ||||| || Sbjct 9470 CTTGGTGCTTCGCCTTCGCGGTGG 9447 >seq59190 Length=243 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||| || | || || || || ||||| || ||||| || || || || || Sbjct 29 ACCATGCAGATTTTCGTCAAGACCCTCACGGGTAAGACAATTACCCTTGAGGTCGAGTCC 88 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || ||||||||||||||||| ||||| |||||||| Sbjct 89 TCTGACACTATCGAGAGTGTCAAGACCAAGATCCAAGACAAAGAGGGAATCCCTCCCGAC 148 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 ||||| ||| | ||||| || || || ||||| |||||| | | | || || || Sbjct 149 CAACAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGACGTACTCTTTCTGACTAC 208 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||||| |||||||| || || || ||| | ||| Sbjct 209 AACATCCAAAAGGAGTCCACCCTCCACCTCGTG 241 >seq6776 Length=2740 Score = 114 bits (126), Expect = 1e-20 Identities = 173/246 (70%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || ||||| ||||| || || || |||| || || || | Sbjct 1210 ACCATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCG 1269 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | |||||| | || | || || |||||||| ||||| || || || || || || Sbjct 1270 AGCGACACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGAC 1329 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || || ||||||| ||||| || ||||||||||| | | | || || || Sbjct 1330 CAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTAC 1389 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAG 24940 ||||| || ||||| || || || ||| ||||| |||| ||||||| |||| | ||| Sbjct 1390 AACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGCGTGATGGAG 1449 Query 24941 CCAACG 24946 || ||| Sbjct 1450 CCGACG 1455 >seq22 Length=338851 Score = 109 bits (120), Expect = 5e-19 Identities = 159/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 24707 CAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGAC 24766 |||||||| | || || | || || || || || || ||||||||||| | |||| Sbjct 331118 CAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTCGAAGTAGAGAGCTCCGAT 331059 Query 24767 ACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAA 24826 || | || | || || |||||||| ||||| |||||||| || || || |||||| Sbjct 331058 ACCATCGAGAGTGTGAAGACCAAGATCCAGGACAAGGAAGGAATCCCCCCTGACCAACAA 330999 Query 24827 CGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATT 24886 || |||||||| ||||| || ||||| ||||| | | | | || || || ||||| Sbjct 330998 CGCTTGATCTTCGCCGGAAAGCAGCTCGAGGACGGACGCACCCTCTCCGACTACAACATC 330939 Query 24887 CAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 |||||||| || | ||||||||| | || | || |||||| Sbjct 330938 CAAAAGGAGAGCACCTTGCACTTGGTGCTCCGCCTTCGTGGAGGC 330894 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || ||||| || || || || | || || || | | Sbjct 331529 ATGCAAATCTTCGTCAAGACCCTCACCGGAAAGACCATCACCTTGGAGGTCGAGAGCTCT 331470 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||||||||||||| |||||||| || || || ||| Sbjct 331469 GATACCATCGAGAGCGTGAAGACAAAGATCCAAGACAAGGAAGGAATCCCCCCTGACCAA 331410 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| | ||||| ||||| || || || |||||| | | | | || || || || Sbjct 331409 CAACGCCTTATCTTCGCCGGAAAGCAACTCGAGGATGGACGCACCCTCTCCGACTACAAT 331350 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||| || || | ||||||||| | || | |||||||| Sbjct 331349 ATTCAAAAGGAGTCCACCTTGCACTTGGTGCTTCGCCTTCGCGGAGG 331303 Score = 107 bits (118), Expect = 2e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 24707 CAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGAC 24766 |||||||| | || || || || || || ||||| ||| | || || || | | || Sbjct 332090 CAGATCTTCGTCAAGACTCTCACTGGCAAGACTATAACGTTGGAGGTCGAGAGCTCTGAT 332031 Query 24767 ACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAA 24826 || | || | || || ||||||||||||||| |||||||| || || || |||||| Sbjct 332030 ACCATCGAGAGCGTGAAGACAAAGATCCAAGACAAGGAAGGAATCCCCCCTGACCAACAA 331971 Query 24827 CGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATT 24886 || | ||||| || || || ||||| |||||| | | | | || || || ||||| Sbjct 331970 CGCCTTATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACCCTCTCCGACTACAACATC 331911 Query 24887 CAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||| || || || ||||||||| | || | || ||||| Sbjct 331910 CAGAAGGAGTCTACCCTTCACTTGGTGCTCCGCCTTCGTGGAGG 331867 Score = 102 bits (112), Expect = 7e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||||||||| || || || || ||||| ||||| ||||||||||||||||| || Sbjct 331673 AAGATCCAAGACAAGGAGGGCATCCCCCCCGACCAACAGCGTTTGATCTTTGCCGGAAAG 331614 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||||| |||||| | | | || || || ||||| || ||||| || || || ||| Sbjct 331613 CAGCTTGAGGATGGACGCACCTTGAGCGACTACAACATCCAGAAGGAGTCCACCCTCCAC 331554 Query 24908 TTGGTG 24913 |||||| Sbjct 331553 TTGGTG 331548 >seq62579 Length=228 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| ||||| || || || || || || || || || ||||||| ||||| || Sbjct 219 AAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAG 160 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||||||||||| | | | || || || ||||| || ||||| || || || ||| Sbjct 159 CAGCTGGAGGAGGGCCGCACGCTCTCGGACTACAACATCCAGAAGGAGTCCACGCTGCAC 100 Query 24908 TTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| |||| ||||||| ||| Sbjct 99 CTGGTGCTGCGCCTGCGCGGCGGC 76 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449505699824360