Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_022750.1 Length=33628 Score E Sequences producing significant alignments: (Bits) Value seq2320 176 1e-39 >seq2320 Length=11620 Score = 176 bits (194), Expect = 1e-39 Identities = 821/1287 (64%), Gaps = 71/1287 (6%) Strand=Plus/Plus Query 1290 AGGGCGTGCATGGTCGCCCAGGCGAGGTCGGCGTGGCTGGCTTCCTCGCTGCGGCTGGCC 1349 || ||||||| | ||||||||| ||||| ||||| | | || |||| | ||||| || Sbjct 8384 AGCGCGTGCAGGCACGCCCAGGCAAGGTCCGCGTGTCCTGTTTGCTCGTTACGGCTCGCT 8443 Query 1350 TCATAGGTGGCGCTGCGTCCGCTGCTGGTCATGGTCTTGCGGATAGCCATAAACGAGCTG 1409 ||||| ||| | | |||||| |||||||| ||||| || ||||| ||||| Sbjct 8444 TCATAAGTGACTTTCTTTCCGCTCGCCGTCATGGTTTTGCGAATCGCCATGAACGATTGC 8503 Query 1410 GTGATGTCGGTGGCGCTGACGTCATATTCCAGACAGCCACGGCGGATAAC-GTCTTTTGC 1468 | | ||| || | | | || |||| || | ||| | ||| || | | || Sbjct 8504 GCTAAGTCTGTCCATCCGGCATCGAATTCGAGCCGGCCCTTACCGATCACCGACAA--GC 8561 Query 1469 CTT-GAGCACCATTGCGGTT-TTCATTTCCGGCGTGTAGCGGATATCGCGCGCGGCGGGA 1526 ||| |||||||| |||| || | ||| |||| ||| || || |||| ||| Sbjct 8562 CTTTGAGCACCAG-GCGGCCCTTAACTTCTGGCGAATAGTTGAGCGCGACCGCGTTCGGA 8620 Query 1527 TAGAACGAGCGCACGAGCTGGAACACACCGACACCGAGGCCGGTGGCATCAATCCCGATG 1586 |||||| | |||||||| | || || |||| ||| || | ||| ||| | || Sbjct 8621 TAGAACTGCCTGACGAGCTGATAGACGCCCTGGCCGATGCCTGTCGTATCGATCGCCATA 8680 Query 1587 TATTCGACGTTGTATTTTTCGGTGAGTTTGCGGATGGATTCTGCCTGGGTGGCAAAGTCC 1646 || |||||||||||| | |||| ||| || | || ||||| | | || ||| Sbjct 8681 TAGGCGACGTTGTATTGCTGCGTGATCGCGCGTATCGCCTCGGCCTGTGCCTCGAAATCC 8740 Query 1647 ATGCCTTTCCACTGGTGACGT-TCAAGGATCCTGAATTTGCCACCGGCCACCACCGGCGG 1705 ||||| ||| ||| || | | || | | || ||||| || | |||| ||||||| Sbjct 8741 ATGCCGCGCCATTGGC-ACTTGTGCAGCACGCGAAACTTGCCCCCAGGCACCGCCGGCGG 8799 Query 1706 TGCCAGCACCACGC---ATCCGGCGCTGTCGCCACGGT-GTGACGGGTCGTAACCAATCC 1761 ||| | | |||| | ||||| ||| || || | | | ||||| || || | || Sbjct 8800 TGCGA---CGACGCTCAAGCCGGCCGAGTCACC-CGATAGCGCTGGGTCATAGCCGACCC 8855 Query 1762 ATACCGGGCGGGAGCCGAACGGATTTGCGGCAAACGGCGCATAGTCTTCCCATTCTTCCA 1821 | | |||||| ||||||| || | ||||| Sbjct 8856 ACAGCGGGCGATAGCCGAAAGGGC--GGGGCAA--------------------------- 8886 Query 1822 GCGTGTCGACCATACAGCGTTGCAGCTCCTCGAACGGGAACACCGACGCCTTGTCGTCAA 1881 |||||||| || || || | ||| ||| |||||| | |||||| | ||||| | Sbjct 8887 -----TCGACCATGCAACGCTGTAAATCCGCGAGCGGGAAAATCGACGCTGTATCGTCGA 8941 Query 1882 CAAATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGTTTGAGCTGCT 1941 ||| | ||||| ||||| || | || | ||||||| ||| | |||| Sbjct 8942 TAAACTGGCACATCAACAGATTGGCGTATTCCTGCGCGCTGTATTCAAGACGTAGCTCGC 9001 Query 1942 CAATGTCGAACAGCGTGCAGCCGCCTTTCAGGGCGTCCTCAATGGTGACAATCTGCCGCC 2001 | || |||||||| ||| ||||| | ||| ||||| | ||| || ||||| |||| Sbjct 9002 CGATATCGAACAGGTCGCACCCGCCGGCGACGGCATCCTCGACGGTCACGATCTGGCGCC 9061 Query 2002 ACTGGCCGTCCGCACAGAGAAGCCCACCGGCAAGGGCGTTATGACTGACGTCGATTTCCA 2061 | || | ||| | |||||| | || ||||| || || || | | ||||| | | || Sbjct 9062 ATTGCCTATCCTCGCAGAGACGGCCGCCGGCGAGCGCCTTGCGCGTTACGTCCAGATGCA 9121 Query 2062 CGCGTTCGGCGGCGCTGGCGCGTCCCCGGTTGAACAGTTCACCCGACCAGAACGGGTAGG 2121 | ||| | | ||||| || |||||||| | || || |||||| | |||| Sbjct 9122 GATGATCGACCT---TTGCGCGGCCTCGGTTGAAGTGCTCGCCACTCCAGAAGGTATAGG 9178 Query 2122 CGTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTCGATCGC-AGGTGACTCTGTGAG 2180 || | || | | | ||||| |||||||||||||| || | | | | || Sbjct 9179 CGGCATGTCCAATGCTCGACGGCGTGGAGAAATAGGTTTTTCTCCATTTTTTTGTGCATC 9238 Query 2181 GCCATACCTGATGCCACCTTACGCAGTACCTGAAAATTCGGGA-TCCAGAAAATCTCATC 2239 ||||| || || || |||||| ||| | |||| | || | |||| || || || Sbjct 9239 GCCATGCCCGACGCGACCTTATTCAGCTCGCGAAA-TCCGCCAGTCCAAAAGTATTCGTC 9297 Query 2240 GACGTACAGGTCGCCGTTATGGCTCTGTGCGGTGTTGGAGTTGGTGCCGAGAAAAATCAG 2299 || || | | ||||| || ||||||||||||| | ||| ||||| ||||| | Sbjct 9298 GAAATAGAAATTGCCGTGATAGCTCTGTGCGGTGCGCGCGTTCGTGCCTAGAAAGCGTAA 9357 Query 2300 TTTTGCACCGTTATTGCCCAGGACAATCGGGTCACCGGTCAGGTCAACGTCAACCAGC-- 2357 | || | ||| || || |||||||| || || || || || || | | Sbjct 9358 CGTCGCCTC---ATTCGGCAAGATGATCGGGTCGCCTGTTAGCTCGACATCGGCGGCCTC 9414 Query 2358 -CGGGCAAA--GGCGATGATGTATTCGCG-GAACACATACGCCTGCGTTTTACTGGCCGA 2413 || ||||| ||| | ||||| | ||| ||| || | ||| || | || |||||||| Sbjct 9415 GCGCGCAAACTGGCAA--ATGTACT-GCGTGAAAACGTGCGCGTGTGCCTTGCTGGCCGA 9471 Query 2414 CAGAAAAATCTGGTTATGACCGGTTTTCAGGGCGCGCAGCAGCGCCTCGCGGGAAAAATA 2473 |||||||||||| | | ||||| | | ||| ||| ||||| || | ||||| Sbjct 9472 CAGAAAAATCTGATCGCGGCCGGTCGTGATCGCGTCGTCCAGTGCCTCTCGTGCGAAATA 9531 Query 2474 AAACGTCGCGCCAATCTGGCGGGATTTCAGAATATCGCGGATGCGGTGCTCAAGCCCGGC 2533 |||||||||| ||||| || || || ||||| | ||| ||| ||| | |||| Sbjct 9532 CCACGTCGCGCCGATCTGCCGCGACTTGAGAATGTTGCGCGTGC---GCTGATGCCCTTG 9588 Query 2534 GCGATACCAGTGCAACTGATATTCGAA 2560 ||||||||| | ||||| ||||| Sbjct 9589 CCGATACCAGACCTTTTGATAGTCGAA 9615 Score = 152 bits (168), Expect = 1e-32 Identities = 283/408 (69%), Gaps = 8/408 (2%) Strand=Plus/Plus Query 358 CCCATCAACTGAAAGGGGATGCGGTGTGCGTCCAGCAGGTCAGCGGCGC-TGGCTTTTTT 416 ||||| | ||| ||||||||| || || | |||| ||| || ||| || | || || Sbjct 7452 CCCATGAGCTGCGGGGGGATGCGATGCGCCGCGAGCAAGTCGTCG-CGCGTGACATTCTT 7510 Query 417 GATATTaaaaaaaTCGTCCTTCGTCGCCACTTCACTGAGCGGGATAATTTTAATGCCGTC 476 |||||| ||||| ||||| |||| || || || | || || | | || ||||| Sbjct 7511 GATATTGAAAAACTCGTCTTTCGCCGTGACCTCGGAAACGGGAATGAGCTGGATACCGTC 7570 Query 477 GGCTTTCCCTTGCGGGGCATAGAGAAACAGATTTTTAAAGTTGT-TGCGGCCTTTCGACT 535 || || | ||| || || | ||||| ||| || ||| || |||| | | Sbjct 7571 TTTCTTGCCGTTCGGCGCGTACATGAACAGGTTTCGGAAATTGCCTGGCCCCTTGCTGTT 7630 Query 536 TCACCATGTTTTCGCGGAGCATTTCGATATCG--TTGCGATCCTGCACGGCATCGGTGAC 593 | | | | | |||| | | |||| |||| |||||| |||| | ||||| || | Sbjct 7631 TTTCAACGCCT-CGCGCATGTTGTCGACATCGGTTTGCGA--CTGCGCCGCATCCGTCAT 7687 Query 594 GTACATGATGTATCCGGCATGTGCGCCGTTTTCGTAATACTTGCGGCGGAACAGCGTGGC 653 ||||| ||| | || || || | || || ||||||||| ||||| || ||||| || Sbjct 7688 GTACAGGATAAAGCCCGCGTGCGAACCATTCTCGTAATACCGCCGGCGAAATAGCGTCGC 7747 Query 654 CGACTCATTCAGCCAGGCAGAGTTAAGGGCGCTGAGATATTCCGGCAGGCCGTACAGCTC 713 |||||| |||| ||| || | || ||||||| ||||||||| |||| ||| |||| ||| Sbjct 7748 CGACTCGTTCAACCATGCCGCGTGCAGGGCGCCGAGATATTCGGGCAAGCCATACACCTC 7807 Query 714 CTGATTAATATCCGGCTCCAGCAGGTGAAACACGGAGCCGGGCGTGAA 761 ||||||||| ||||| |||| || |||| ||||| |||| || ||| Sbjct 7808 CTGATTAATGTCCGGTTCCATCAAGTGATGCACGGTCCCGGCCGCGAA 7855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107399050119460