Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30]
69,687 sequences; 205,175,886 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq146 125 5e-24
seq59190 93.3 3e-14
>seq146
Length=178297
Score = 125 bits (138), Expect = 5e-24
Identities = 157/213 (74%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
|| |||||||| || || ||||| || ||||||||||| || || | | |||||| |
Sbjct 157374 CGGAGCACCAAGTGGAGGGTGGACTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGTCCA 157433
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| |||||||| || || || | || | | ||| || || || ||||| ||||| |||
Sbjct 157434 TCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGTTGTTGGTCAGGGGGAATTCCCTCCTTG 157493
Query 29692 TCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
||||| ||| || || || || | || | |||||||| || ||||| ||||| ||
Sbjct 157494 TCTTG-AATCTTAGTCTTTACGCTCTCAATGGTGTCAGAGCTCTCGACTTCGAGAGTAAT 157552
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
||| |||||||| | ||| ||||| || |||||
Sbjct 157553 AGTCTTGCCAGTGAGGGTCTTAACGAAGATCTG 157585
>seq59190
Length=243
Score = 93.3 bits (102), Expect = 3e-14
Identities = 150/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634
||||| | || || ||||| || ||||| ||||| || || | || || || |||
Sbjct 243 AGCACGAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGTCCATCC 184
Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694
||||| || || ||||| | || | | || || || || || || ||||||||||||
Sbjct 183 TCGAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCGGGAGGGATTCCCTCTTTGTCT 124
Query 29695 TGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753
|| || || || |||||| | || | ||||||||| || || ||||| || || ||
Sbjct 123 TG-GATCTTGGTCTTGACACTCTCGATAGTGTCAGAGGACTCGACCTCAAGGGTAATTGT 65
Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || | ||| || || || ||||||||
Sbjct 64 CTTACCCGTGAGGGTCTTGACGAAAATCTGCAT 32
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 384892029360867
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |