Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_023575.1 Length=45550 Score E Sequences producing significant alignments: (Bits) Value seq4462 158 4e-34 seq5633 91.5 4e-14 seq6342 80.6 8e-11 >seq4462 Length=5303 Score = 158 bits (174), Expect = 4e-34 Identities = 232/330 (70%), Gaps = 9/330 (3%) Strand=Plus/Plus Query 30056 CCGCCAAACATCTGCATCTGCCCGTGCATGTCGACGATGATCTCTGTTGTGTAGCGGTCC 30115 || || | |||||||||||| |||| ||| ||| || || | ||||||||| Sbjct 4769 CCACCCAGCATCTGCATCTG---------GTCGGCGACGATTTCCGTCGAGTAGCGGTCG 4819 Query 30116 TGACCGTCCTGCGCCTGCCACTTTCGAGTTCTGAGTGAACCCTCGACGTACAGTTGCTGA 30175 ||||||||||| ||||| || || || | || || |||| |||| | | Sbjct 4820 GTGCCGTCCTGCGCTTGCCATTTGCGCGTGCGGATGCGGCCTTCGATATACACCGACGAA 4879 Query 30176 CCCTTCTTTACGTGCTGCCCGACGATCTCCGCCAACTTCCCGAAGAACACCACGCGGTGC 30235 |||||||| | || || | ||||||||| |||| |||||||||| |||||||||| Sbjct 4880 CCCTTCTTCAGGTACTCCGAGACGATCTCGGCCAGGCGCCCGAAGAACGACACGCGGTGC 4939 Query 30236 CATTCGGTGCGCTCCTGTTGCTGGCCGGTCTGCTTGTCCTTCCAGCTCTCGCTGGTGGCG 30295 |||||||| |||| || ||||| | ||||||||| ||| ||| | |||||| Sbjct 4940 CATTCGGTCATTTCCTTGAACTCGCCGGACGCCTTGTCCTTGTAGCGGTCGGTCGTGGCG 4999 Query 30296 AGGGTGATGTTGGTCACCGCATTGCCGTTGGGCATATAGCGAGTTTCCGGGTCACCACCG 30355 ||| ||||| | ||| || | |||| | |||| |||||| |||||| || | ||| Sbjct 5000 AGGCGAATGTTCGCCACGGCGTCGCCGCTCGGCAGATAGCGCACTTCCGGATCGGCGCCG 5059 Query 30356 ACGTTGCCAACCAGAATGACTTTGTTAACG 30385 | |||||| || || || || ||||| ||| Sbjct 5060 AGGTTGCCGACGAGGATCACCTTGTTCACG 5089 >seq5633 Length=3737 Score = 91.5 bits (100), Expect = 4e-14 Identities = 141/199 (71%), Gaps = 8/199 (4%) Strand=Plus/Plus Query 34320 TCAGTCGGTGTAGGCGATGTACTTGAACTGGCCTTTCTCTTCGTTGAAGTACTCGAAGCG 34379 |||||| || |||||||||||||||||| ||| || ||| | ||||||||| Sbjct 2079 TCAGTCCGTATAGGCGATGTACTTGAACCTGCCGC------CGCCGAACTGCTCGAAGCG 2132 Query 34380 GCCGCCAAACGTCCCGATCACGGCTTTTTCAACCTCGGCGCGCGAAGTGCCGATGGGGAA 34439 |||||| || || ||| |||||| || || || || |||||| | || | ||| | Sbjct 2133 GCCGCCGAAGGTTCCGCGCACGGCGTTCTCGACGTCTTCGCGCGTCGCGCTGGGAGGGTA 2192 Query 34440 AACTCCCTTCTTGATCATTGATGCGCCTGTGTGCGGCTCCCATGT-CCAGTCGATTTTTG 34498 || || | ||||||||| | |||| | |||| || | ||| ||||||||| |||| Sbjct 2193 GACCCCTTCCTTGATCATCGTCGCGCTCGAGTGCCCCTTGC-TGTGCCAGTCGATCTTTG 2251 Query 34499 TTGGGTCAAGCACGCGAGG 34517 | | ||| | | |||| || Sbjct 2252 TGGTGTCCAACTCGCGTGG 2270 >seq6342 Length=3070 Score = 80.6 bits (88), Expect = 8e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 32996 ACCCGCTTGAACTCGACGACCCAGACCCAGGGATTCGCGGCCCAGGAGTCGGCGCCGTTG 33055 || |||||||||||||||||||||||||| || || ||| |||| || || | |||||| Sbjct 956 ACTCGCTTGAACTCGACGACCCAGACCCAAGGGTTGGCGTCCCACGATTCAGGCCCGTTG 897 Query 33056 ATCGACTCCCACAG 33069 || || |||||||| Sbjct 896 ATTGAGTCCCACAG 883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145517879399728