Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_023588.1 Length=33525 Score E Sequences producing significant alignments: (Bits) Value seq2320 376 5e-100 >seq2320 Length=11620 Score = 376 bits (416), Expect = 5e-100 Identities = 854/1271 (67%), Gaps = 69/1271 (5%) Strand=Plus/Plus Query 2973 CCGCTCGGGGTGATGGTTTTCTGGATCGCCAGCAGTGACTGCGTGAGGTCGGTCCAGCCG 3032 ||||||| || |||||||| | ||||||| | || |||| | ||| ||||| ||| Sbjct 8462 CCGCTCGCCGTCATGGTTTTGCGAATCGCCATGAACGATTGCGCTAAGTCTGTCCATCCG 8521 Query 3033 GCGTCGTACTCCAGCCGTTCGTCATTGATTACGTCGTAGGCTTTCAGCACCAGCCGCGTT 3092 || ||| | || ||||| | | | ||| || || |||| |||||||| || Sbjct 8522 GCATCGAATTCGAGCCGGCCCTTACCGATCACCGACAAGCCTTTGAGCACCAGGCGGCCC 8581 Query 3093 TTCACCTCGGGCGAGTAGTTGAAGACGGTCACGCCGGGGAAGAACTGGCGCACCAGCTGT 3152 || || || ||||| ||||||| || | || || ||||||| | || ||||| Sbjct 8582 TTAACTTCTGGCGAATAGTTGAGCGCGACCGCGTTCGGATAGAACTGCCTGACGAGCTGA 8641 Query 3153 GCAACGCCGGTGCCCATGCCGGTCGCATCCA-CGCCGATGTAGGTCACCCAATAGCGCTT 3211 ||||| ||| ||||| |||| ||| | |||| || |||| || || ||| Sbjct 8642 TAGACGCCCTGGCCGATGCCTGTCGTATCGATCGCC-ATATAGGCGACGTTGTATTGCTG 8700 Query 3212 GGTGATCTGCTCG-ATGAACGCGGCCTGGTCCTTGAACTCCATGCCCTTGAACTGATGGC 3270 |||||| || || || | ||||||| ||| ||| |||||||| | | |||| Sbjct 8701 CGTGATC-GCGCGTATCGCCTCGGCCTGTGCCTCGAAATCCATGCC---GCGCCATTGGC 8756 Query 3271 GTTC---CAGCACGCGGAACTTGCCGCAGGGCACCAGCGGCGGGGCTACCACCACGATGC 3327 | ||||||||| |||||||| | |||||| |||||| || || || | || Sbjct 8757 ACTTGTGCAGCACGCGAAACTTGCCCCCAGGCACCGCCGGCGGTGCGACGACGCTCAAGC 8816 Query 3328 CCGCGCTGTCGCCGGTCTCGGCCGGGTCGTAGCCGATCCACACAGCGCGGTCGCCGTAGG 3387 | || ||| || | || ||||| ||||||| ||||| | ||| | |||| | | Sbjct 8817 CGGCCGAGTCACCCGATAGCGCTGGGTCATAGCCGACCCACAGCGGGCGATAGCCGAAAG 8876 Query 3388 GCCGGACGGCAAACGGCTTGTAGTCGTCCGCCCACTCGACCCAGCTATCGACCTGACAGG 3447 | ||| ||||| |||||| || Sbjct 8877 GGCGG--GGCAA-----------------------------------TCGACCATGCAAC 8899 Query 3448 GCTGCAGCATCGTGAGCGGGAATACGCTGGCGCTGT--CATCCACGAACTCGCACATCAG 3505 |||| | || ||||||||| | | |||||| | || | |||| |||||||| Sbjct 8900 GCTGTAAATCCGCGAGCGGGAAAATC--GACGCTGTATCGTCGATAAACTGGCACATCAA 8957 Query 3506 CAGATTGGCGAATTCCTCGGCGCTGTAGTCGCGGCGCAGTTCCTCGATATCGAACAGGTC 3565 |||||||||| |||||| |||||||| || | || || || |||||||||||||||| Sbjct 8958 CAGATTGGCGTATTCCTGCGCGCTGTATTCAAGACGTAGCTCGCCGATATCGAACAGGTC 9017 Query 3566 ACAGCCACGGCCGGCCGCATCAAGAACGGTCACGATCTGGCGCCAGATCGCGTCCTCGCA 3625 || || | | || | ||||| |||||||||||||||||||| | |||||||| Sbjct 9018 GCACCCGCCGGCGACGGCATCCTCGACGGTCACGATCTGGCGCCATTGCCTATCCTCGCA 9077 Query 3626 ACGCCGGCCACCCATCAGGCGCGCG---TG-GC-TCACATCCAGCTGGATCTGCTGGGAC 3680 | ||||| || |||| ||| || || | || ||||| || | || | | | Sbjct 9078 GAGACGGCCGCC-----GGCGAGCGCCTTGCGCGTTACGTCCAGATGCAGATGATCGACC 9132 Query 3681 ACCGAGCGTCCCTTGTTGAAGCGCTCGCCGGTCCAGAAGTCGAAGGCTTCATGCGCCATG 3740 | ||| || ||||||| ||||||| |||||||| |||| |||| | ||| Sbjct 9133 TTTGCGCGGCCTCGGTTGAAGTGCTCGCCACTCCAGAAGGTATAGGCGGCATGTCCAATG 9192 Query 3741 GTGGACGGCGTGCTGAAGTAGGTCTTGCGCCACTTCTT-GTGCATCGCCATGCCGCTGGC 3799 | ||||||||| ||| ||||| || | ||| || || ||||||||||||||| || Sbjct 9193 CTCGACGGCGTGGAGAAATAGGTTTTTCTCCATTTTTTTGTGCATCGCCATGCCCGACGC 9252 Query 3800 GACCTTGTTCAGCTGGTTGAAACCGTAGGTCCAGAAGAACTCGTCAAAGTAGAAATTGCC 3859 |||||| ||||||| | || ||| ||||| ||| | ||||| || ||||||||||| Sbjct 9253 GACCTTATTCAGCTCGCGAAATCCGCCAGTCCAAAAGTATTCGTCGAAATAGAAATTGCC 9312 Query 3860 GTGGTAGCCCTGTGCGGTGCGGGCGTTGGTGCCCAGGAAGAACAGCTCGGCGCCATTGGC 3919 ||| |||| |||||||||||| ||||| ||||| || ||| | | || |||| | Sbjct 9313 GTGATAGCTCTGTGCGGTGCGCGCGTTCGTGCCTAGAAAGCGTAACGTCGCCTCATTCGG 9372 Query 3920 CAGGGTGATCGGGTCGCCGGTCAGGTCACGGTCCAGCACCTCACGCACGAAGCCCCGCAT 3979 || | ||||||||||||| || || || || |||| ||| | || | || Sbjct 9373 CAAGATGATCGGGTCGCCTGTTAGCTCGACATCGGCGGCCTCGCGCGCAAACTGGCAAAT 9432 Query 3980 ATAGCCGAG-GAAGATGTGCGCTTGGCTCTTGGATGCGCTCAGGAAAATCTGGTTGCGGC 4038 || | | | ||| | |||||| || |||| || ||| |||||||| | ||||| Sbjct 9433 GTA-CTGCGTGAAAACGTGCGCGTGTGCCTTGCTGGCCGACAGAAAAATCTGATCGCGGC 9491 Query 4039 CGGTGGTCAGCGCGTCGATCAGCGCCTCGCGGGCGAAGTAGTAGGTGGCACCGATCTGGC 4098 |||| || | ||||||| ||| ||||| || ||||| || | || || |||||||| | Sbjct 9492 CGGTCGTGATCGCGTCGTCCAGTGCCTCTCGTGCGAAATACCACGTCGCGCCGATCTGCC 9551 Query 4099 GCGACTTCAGGATGATGCGCGTGCGTTCGTTGCCC-GCCCGGTACCAATCGCGCTGGTAG 4157 ||||||| || ||| |||||||||| | | ||||| ||| ||||| | || ||| Sbjct 9552 GCGACTTGAGAATGTTGCGCGTGCGCT-GATGCCCTTGCCGATACCAGACCTTTTGATAG 9610 Query 4158 TCGAAACAGCCATCCACGAACGCCGTC-TGCAGGCGCTCGATCTCTTCCTCGCTGAACTC 4216 ||| |||||| | || ||| | | || | || |||||| || || ||||||||||| Sbjct 9611 TCG-AACAGCGAATCAAGAAAGGCCTCGCGAAGCCGCTCGGCCTGCTCGTCGCTGAACTC 9669 Query 4217 GTTCTTGCGCG 4227 ||| ||||||| Sbjct 9670 GTT-TTGCGCG 9679 Score = 127 bits (140), Expect = 4e-25 Identities = 271/404 (67%), Gaps = 18/404 (4%) Strand=Plus/Plus Query 1952 CGAGCCAAAGCCGCCGCTGTTCTGGGGCACGATGCCCAGCAGCTGCGGCGGTACCCGTAA 2011 || |||||| |||||| | || |||||||| |||| |||||||| || | || Sbjct 7418 CGCGCCAAATCCGCCGGTATTGCTCGGCACGATCCCCATGAGCTGCGGGGGGATGCGATG 7477 Query 2012 CGCGGCCAGCATGTCATCGCGGGTCACGCTCTTGATGCCGGTGAATTCATCCCTTGCCGC 2071 ||| || |||| ||| ||||| || || ||||||| | || || || | |||| Sbjct 7478 CGCCGCGAGCAAGTCGTCGCGCGTGACATTCTTGATATTGAAAAACTCGTCTTTCGCCGT 7537 Query 2072 CACCTCACTGACCGGGATCACCTGCAGGCCGTCCTTCTTCCCGTTGGGCGAGTGAACGAA 2131 ||||| || || || | ||| | ||||| ||||| ||||| |||| || | ||| Sbjct 7538 GACCTCGGAAACGGGAATGAGCTGGATACCGTCTTTCTTGCCGTTCGGCGCGTACATGAA 7597 Query 2132 CAGGTTCTTGAAATTGCCCGGCCCGCGCGACTGCCGCAGTGCGTCGCGTAACGCATCCAC 2191 |||||| ||||||||| ||||| ||| | | | ||| | ||||| Sbjct 7598 CAGGTTTCGGAAATTGCCTGGCCCCT-----TGCTGTTTTTCAACGCCTCGCGCATGTT- 7651 Query 2192 GTCCATGCCCTCGGGTTGGGG---------ATCGGTCATGTAGAGGATGTAGCCGGCGTG 2242 ||| | | |||| ||| | ||| |||||||| ||||| |||| ||||| Sbjct 7652 GTCGA---CATCGGTTTGCGACTGCGCCGCATCCGTCATGTACAGGATAAAGCCCGCGTG 7708 Query 2243 CGAACCGTTGTTGTAATACTTCCGGCGGAAAAGCGTGGCCGACTCATTCAGCAACGCGGC 2302 |||||| || | ||||||| |||||| || ||||| |||||||| |||| | | || || Sbjct 7709 CGAACCATTCTCGTAATACCGCCGGCGAAATAGCGTCGCCGACTCGTTCAACCATGCCGC 7768 Query 2303 CTGTACGGCTGGCATCCATTCCGGCAGGCCGTAGATTTCCTGAT 2346 || | ||| | |||| |||| ||| || | ||||||| Sbjct 7769 GTGCAGGGCGCCGAGATATTCGGGCAAGCCATACACCTCCTGAT 7812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107069722874378