Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30]
69,687 sequences; 205,175,886 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq500 91.5 1e-12
>seq500
Length=88253
Score = 91.5 bits (100), Expect = 1e-12
Identities = 186/275 (68%), Gaps = 6/275 (2%)
Strand=Plus/Plus
Query 282188 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 282247
||||| || ||||| ||||||||||| | || ||||| ||| || | || | ||||
Sbjct 36740 CGATTGTCGAAATCCTCACCTCCCAAGTGCGTGTTTCCACCCGTCGCCTTCACCTCGAAA 36799
Query 282248 AGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307
| ||| | || | | | || | ||| || || ||||| |||| || |||||
Sbjct 36800 ACGCCACCCTCGATTGTGAGCAGCGAAACGTCGAACGTGCCACCTCCCAAGTCGAAAATG 36859
Query 282308 AGTACATTCATTTC---TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCA 282364
|| | ||| | || || | || ||||| || || || ||||||| || |||||
Sbjct 36860 AGGATGTTCTTCTCGGATTCGCCT---TTTTTGTCCAGGCCGTACGCAATGGCTGCAGCG 36916
Query 282365 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 282424
|| || || || || || | || || || || || || || ||||| ||||| ||
Sbjct 36917 GTGGGCTCGTTGATGATGCGCAGCACGTTGAGTCCCGCGATGGCCCCTGCGTCTTTTGTT 36976
Query 282425 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAAC 282459
||||| ||||| ||||| || |||||||||||
Sbjct 36977 GCTTGCCTTTGGCCGTCGTTGAAGTATGCAGGAAC 37011
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3737209062797262
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |