Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq500 91.5 1e-12 >seq500 Length=88253 Score = 91.5 bits (100), Expect = 1e-12 Identities = 186/275 (68%), Gaps = 6/275 (2%) Strand=Plus/Plus Query 282188 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 282247 ||||| || ||||| ||||||||||| | || ||||| ||| || | || | |||| Sbjct 36740 CGATTGTCGAAATCCTCACCTCCCAAGTGCGTGTTTCCACCCGTCGCCTTCACCTCGAAA 36799 Query 282248 AGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307 | ||| | || | | | || | ||| || || ||||| |||| || ||||| Sbjct 36800 ACGCCACCCTCGATTGTGAGCAGCGAAACGTCGAACGTGCCACCTCCCAAGTCGAAAATG 36859 Query 282308 AGTACATTCATTTC---TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCA 282364 || | ||| | || || | || ||||| || || || ||||||| || ||||| Sbjct 36860 AGGATGTTCTTCTCGGATTCGCCT---TTTTTGTCCAGGCCGTACGCAATGGCTGCAGCG 36916 Query 282365 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 282424 || || || || || || | || || || || || || || ||||| ||||| || Sbjct 36917 GTGGGCTCGTTGATGATGCGCAGCACGTTGAGTCCCGCGATGGCCCCTGCGTCTTTTGTT 36976 Query 282425 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAAC 282459 ||||| ||||| ||||| || ||||||||||| Sbjct 36977 GCTTGCCTTTGGCCGTCGTTGAAGTATGCAGGAAC 37011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3737209062797262