Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_023738.1 Length=106327 Score E Sequences producing significant alignments: (Bits) Value seq5875 96.9 2e-15 seq8130 87.8 1e-12 seq9104 82.4 5e-11 >seq5875 Length=3462 Score = 96.9 bits (106), Expect = 2e-15 Identities = 123/166 (74%), Gaps = 5/166 (3%) Strand=Plus/Minus Query 94599 CTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAAT 94658 |||||||||||| || | || ||||| ||||| ||||| ||||| || | || || || Sbjct 243 CTTGATGAGGCCGGTGATGACGTCCACCGAGGGTCGCTGGGTCGCGAGAATCAGGTGGAT 184 Query 94659 GCCGGCCGCACGCGCCTTCTGCGCGATGCGGACAATGTTGGCCTCAACCTCTTTCTTG-T 94717 |||||| || ||||| ||||| |||| || | || | || | | |||||| Sbjct 183 GCCGGCGGCGCGCGCTTTCTGTGCGAGACGCGCGATCAATTCTTCGATC---TTCTTGCC 127 Query 94718 AGCCACCCATCATGAGGTCCGCGAGTTCATCCACCACTACCACGAT 94763 |||| ||||||||||||| |||||||| || | ||| |||||||| Sbjct 126 CGCCA-CCATCATGAGGTCGGCGAGTTCGTCGATCACGACCACGAT 82 >seq8130 Length=1982 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 94876 TCTGTAACCACGGGCTGGAGAAGGTGGGGGATACCGTTGTACGGGGTGAGCTCGACACAT 94935 || || || || ||| ||| || || || || || | |||| || ||||||| ||| Sbjct 1864 TCGGTCACGACCGGCGCGAGCAGATGCGGAATGCCTTCGTACACGGAAAGCTCGAG-CAT 1806 Query 94936 -TTGGGGTCGATCATGATGAGTTTGACCCGATCAGGGGTCGCCCGGTAGAGCAGCGAAAC 94994 || |||||||||||||| || || || || |||||| |||||| ||||| | Sbjct 1805 CTTCGGGTCGATCATGATCAGCCGTACGTCCTCGGGCGTCGCCTTGTAGAGGAGCGAGAG 1746 Query 94995 CAGCATTGAGTTGATGAAGCTGGACTTGCCCGATCCGGTCGCGCCAGCCACCAGCAGATG 95054 | ||| | ||||||| | ||||||||||| ||||| | ||| ||||| |||| || Sbjct 1745 GATCATCGCGTTGATGGCGACCGACTTGCCCGAACCGGTGGTGCCCGCCACGAGCATGTG 1686 Query 95055 CGGCATCTTGGCCAG 95069 ||| |||||| || Sbjct 1685 CGGGGCCTTGGCGAG 1671 >seq9104 Length=1597 Score = 82.4 bits (90), Expect = 5e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 94936 TTGGGGTCGATCATGATGAGTTTGACCCGATCAGGGGTCGCCCGGTAGAGCAGCGAAACC 94995 || || ||||||| ||| | |||| | || | | ||||| |||||||||||| | Sbjct 1301 TTCGGATCGATCAGGATCATGCGGACCTGCTCGGCGCTCGCCTTGTAGAGCAGCGACAGG 1242 Query 94996 AGCATTGAGTTGATGAAGCTGGACTTGCCCGATCCGGTCGCGCCAGCCACCAGCAGATGC 95055 | ||| | |||||| ||||||||||| ||||||| ||| ||||| ||||| || Sbjct 1241 ATCATCGCGTTGATCCCCACCGACTTGCCCGAGCCGGTCGTGCCGGCCACGAGCAGGTGG 1182 Query 95056 GGCATCTTGGCCAGGTTCAGGGAGACGTCCTTACCCTCGACGTCCTTGCC 95105 |||||||| || || | | | || ||| || ||| ||||||||| Sbjct 1181 GGCATCTTCGCGAGATCGGCGCAAACCGGCTTGCCGCCGATGTCCTTGCC 1132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339832731217616