Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_024365.1 Length=51090 Score E Sequences producing significant alignments: (Bits) Value seq2291 132 2e-26 >seq2291 Length=11769 Score = 132 bits (146), Expect = 2e-26 Identities = 137/177 (77%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 22766 TACCGCCGCGACTT-GCTGAGCAGGAACAGGTATTCGTGAGCCTTGGTGCAGCGGTCACG 22824 || |||| ||||| ||| || ||||| || ||||||| |||||||||||||| ||||| Sbjct 1022 TAGCGCCCGGACTTCGCT-AGGAGGAAAAGCGATTCGTGCGCCTTGGTGCAGCGATCACG 1080 Query 22825 CGTCGACTCCGGCATAGGGTTTGGCTTGTGCCAGATGATGTCCTGCCGGAGATACCAGCC 22884 | ||| ||||| || || ||||||||||| ||||| || || || || |||||||| Sbjct 1081 CACACTCTCGGGCATTGGATTCGGCTTGTGCCAAATGATCTCTTGGCGCAGGTACCAGCC 1140 Query 22885 GTCGTCCTGCAGCGCGAAGGCCAGGCGCCAGGGCATGCCCATCAAGTCTTTCGGCTT 22941 ||| | ||||||| || || || ||| || ||||| |||| |||||||||||| Sbjct 1141 ATCGGCGCGCAGCGCAAACGCGAGCATCCAAGGGATGCCAATCAGGTCTTTCGGCTT 1197 Score = 96.9 bits (106), Expect = 1e-15 Identities = 136/188 (72%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 23033 CGGCCGTGCGCGCCCCAGCTACCGGCGTAGCTGTCGCCCATGTTTACCCAGATCGTGC-- 23090 || || |||| ||||| ||||||||||| ||||| ||||| | ||||| ||||| Sbjct 1340 CGCCCTTGCGAACCCCACGAGCCGGCGTAGCTATCGCCAATGTTCAGCCAGAGCGTGCCA 1399 Query 23091 -CGTCAGCGCGGAGCACCCGGCGCACTTCGCGGAACACGTCGACCAACCGAGCGATGAAC 23149 ||||| | ||| || | |||| | |||||||||| ||||||| | |||||| | Sbjct 1400 TCGTCAACCAGGA-CATC--GCGCGCGGCGCGGAACACCTCGACCATCGCGGCGATGTAA 1456 Query 23150 TCGGCAGGTGTTTCCTCAAGGCCGATCTGGCCTTCTACGCCATAGTCACGCAGGCCGTAG 23209 || | || | || ||| || || | |||||| | ||| ||||||||||| ||||| Sbjct 1457 GCGTCCGGCGATTTCTCCAGTCCAAGTTGGCCTACGTGGCCGTAGTCACGCAGCCCGTAA 1516 Query 23210 TAGGGCGG 23217 || ||||| Sbjct 1517 TACGGCGG 1524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163231208892488