Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2782 134 3e-26 seq22 125 1e-23 seq6776 113 9e-20 seq146 111 3e-19 seq30454 87.8 4e-12 >seq2782 Length=10868 Score = 134 bits (148), Expect = 3e-26 Identities = 167/225 (74%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || ||||| || || || |||||||| || || |||||||| || | | ||| Sbjct 9156 CGAAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGAAAGGGTACGTCCG 9215 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || |||||||| |||||||||||||| || | |||||| || || || ||||||||||| Sbjct 9216 TCCTCTAGTTGCTTTCCAGCAAAGATGAGGCGTTGTTGGTCAGGGGGGATTCCTTCCTTG 9275 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774 || || ||||| | ||||| || || |||||| || | || || ||||| || || Sbjct 9276 TCCTGGATCTTAGTCTTTACGGACTCGATGGTATCA-GAGCTCTCGACCTCCAAGGTAAT 9334 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATT 82819 ||||| || || | ||||| || || |||| | ||||| ||| Sbjct 9335 TGTCTTACCAGTGAGGGTCTTGACGAAAATCT-AAATATTAAATT 9378 Score = 109 bits (120), Expect = 1e-18 Identities = 153/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || ||||| || || || || ||||| || ||||| ||||| || | | || Sbjct 9459 CGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGAGAGGGTACGTCCA 9518 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || ||||| |||||||| ||||| | | |||||| || || || || |||||||| Sbjct 9519 TCCTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGTTGGTCAGGGGGGATGCCTTCCTTG 9578 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774 || || ||||||| || || ||||| || || || | || || ||||| || || Sbjct 9579 TCCTGGATCTTTGTCTTGACGGACTCAATGGTGTCCG-AGCTCTCCACCTCCAAGGTGAT 9637 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCT 82806 ||||||||| || | ||||| || || |||| Sbjct 9638 CGTCTTGCCCGTGAGGGTCTTGACGAAAATCT 9669 Score = 109 bits (120), Expect = 1e-18 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || ||||| || || || || ||||| || || |||||||| || | | || Sbjct 9775 ACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGAGAGGGTACGTCC 9834 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || |||||||| || || |||||||| || | |||||| || || || ||||||||||| Sbjct 9835 ATCCTCTAGTTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGGGGAATTCCTTCCTT 9894 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773 || || ||||| | || || || || || || | || | || || || | || | Sbjct 9895 GTCCTGGATCTTGGTCTTCACGGACTCGATGGTGTC-TGAGCTCTCCACCTCGAGGGTGA 9953 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||||||| || | ||||| || || |||||||| Sbjct 9954 TGGTCTTGCCAGTGAGTGTCTTCACGAAGATCTGCAT 9990 Score = 84.2 bits (92), Expect = 4e-11 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || ||||| || || || || ||||| || || || || || || | | || Sbjct 8835 CGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCA 8894 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || |||||||| | | |||||| || || || ||||||||||| Sbjct 8895 TCCTCGAGCTGCTTGCCGGCAAAGATCAAACGTTGTTGGTCAGGGGGGATTCCTTCCTTG 8954 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774 || || ||||| | || || ||||| || ||| || | || || ||||| || || Sbjct 8955 TCCTGGATCTTCGTCTTCACGGACTCAATGGTGTCA-GAGCTCTCGACCTCCAAGGTAAT 9013 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCA 82809 || || || || | ||||| || || |||| || Sbjct 9014 GGTTTTACCAGTGAGGGTCTTGACGAAAATCTACA 9048 >seq22 Length=338851 Score = 125 bits (138), Expect = 1e-23 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || ||||| || ||||| || ||||| || || || || || || | | ||| Sbjct 331879 CGGAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCA 331938 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||| ||||| || | |||||| || || || ||||||||||| Sbjct 331939 TCCTCGAGCTGCTTGCCAGCGAAGATAAGGCGTTGTTGGTCAGGGGGGATTCCTTCCTTG 331998 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774 ||||| ||||||| || || | || || |||||| || | || || ||||| ||||| Sbjct 331999 TCTTGGATCTTTGTCTTCACGCTCTCGATGGTATCA-GAGCTCTCGACCTCCAACGTTAT 332057 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTG 82807 |||||||| || | ||||| || || ||||| Sbjct 332058 AGTCTTGCCAGTGAGAGTCTTGACGAAGATCTG 332090 Score = 114 bits (126), Expect = 3e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || ||||||| || || || || || ||||| || || || || | | || Sbjct 331315 CGAAGCACCAAGTGCAAGGTGGACTCCTTTTGAATATTGTAGTCGGAGAGGGTGCGTCCA 331374 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || ||||| ||||| || ||||| || | |||||| || || || ||||||||||| Sbjct 331375 TCCTCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGTTGGTCAGGGGGGATTCCTTCCTTG 331434 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774 ||||| ||||||| || || | || || |||||| || | || || ||||| || || Sbjct 331435 TCTTGGATCTTTGTCTTCACGCTCTCGATGGTATCA-GAGCTCTCGACCTCCAAGGTGAT 331493 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || || | ||||| || || || |||||| Sbjct 331494 GGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCATT 331530 Score = 98.7 bits (108), Expect = 2e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || ||||||| || || || || || || || || || || | | ||| Sbjct 330907 CGGAGCACCAAGTGCAAGGTGCTCTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGTCCG 330966 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || ||||| || ||||| | | |||||| || || || ||||||||||| Sbjct 330967 TCCTCGAGCTGCTTTCCGGCGAAGATCAAGCGTTGTTGGTCAGGGGGGATTCCTTCCTTG 331026 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774 || || ||||| | || ||| | || || ||||| || | |||||||| | || || Sbjct 331027 TCCTGGATCTTGGTCTTCACACTCTCGATGGTATC-GGAGCTCTCTACTTCGAGGGTGAT 331085 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTG 82807 |||||||| ||||| ||||| || || ||||| Sbjct 331086 GGTCTTGCCAGTCAAGGTCTTCACGAAGATCTG 331118 >seq6776 Length=2740 Score = 113 bits (124), Expect = 9e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | |||||| || || || ||||| || || || || || || | | || Sbjct 1427 CGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCC 1368 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || || ||||| || | || || || || || || || ||||| Sbjct 1367 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 1308 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || ||||| || ||||| || | || || || |||| | ||| Sbjct 1307 TCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCGATC 1248 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| |||||| || || |||||||| Sbjct 1247 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1213 >seq146 Length=178297 Score = 111 bits (122), Expect = 3e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || ||||| || || || || || || || || || || || || | | || Sbjct 157374 CGGAGCACCAAGTGGAGGGTGGACTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGTCCA 157433 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || ||||| ||||| || ||||| || | |||||| || || || ||||| ||||| Sbjct 157434 TCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGTTGTTGGTCAGGGGGAATTCCCTCCTTG 157493 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774 ||||||||||| | ||||| | ||||| || ||| || | || ||||| | ||| || Sbjct 157494 TCTTGAATCTTAGTCTTTACGCTCTCAATGGTGTCA-GAGCTCTCGACTTCGAGAGTAAT 157552 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTG 82807 |||||||| || | ||||| || || ||||| Sbjct 157553 AGTCTTGCCAGTGAGGGTCTTAACGAAGATCTG 157585 Score = 111 bits (122), Expect = 3e-19 Identities = 155/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || ||||| || || || || ||||| ||||| || || || | | ||| Sbjct 157694 CGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATATTGTAGTCGCTGAGGGTGCGTCCG 157753 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || ||||| |||||||| ||||| || | ||||| || || || ||||| ||||| Sbjct 157754 TCCTCGAGTTGCTTTCCAGCGAAGATGAGGCGCTGTTGGTCAGGGGGAATTCCCTCCTTG 157813 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774 ||||||||||||| || || | || || || ||| || | || || ||||| || || Sbjct 157814 TCTTGAATCTTTGTCTTGACGCTCTCGATGGTGTCA-GAGCTCTCGACCTCCAACGTGAT 157872 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCA 82809 ||||| || || | || || ||||| ||||||| Sbjct 157873 GGTCTTTCCAGTGAGTGTTTTCACAAAAATCTGCA 157907 Score = 98.7 bits (108), Expect = 2e-15 Identities = 159/225 (71%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || ||||| || || || || ||||| || || || || || || | | || Sbjct 156637 CGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCA 156696 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || |||||||| || ||||| ||||| | | |||||| || || || ||||||||||| Sbjct 156697 TCCTCTAGTTGCTTGCCAGCGAAGATCAAACGTTGTTGGTCAGGGGGGATTCCTTCCTTG 156756 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774 || || ||||| | || ||| || || ||||| || | ||||| || | ||| || Sbjct 156757 TCCTGGATCTTGGTCTTGACAGACTCGATGGTATC-GGAGCTCTCTACCTCAAGAGTGAT 156815 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATT 82819 ||||| || || | ||||| || || ||||| ||||| ||| Sbjct 156816 GGTCTTTCCAGTGAGGGTCTTGACGAAGATCTG--GTATTACATT 156858 >seq30454 Length=461 Score = 87.8 bits (96), Expect = 4e-12 Identities = 150/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || ||||| || || || || || || ||||| || || || || | | || Sbjct 26 CGGAGCACCAAGTGAAGGGTGGACTCCTTTTGAATATTGTAGTCGGAGAGGGTGCGTCCA 85 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||||||||| | | |||||| || || || ||||||||||| Sbjct 86 TCCTCGAGCTGCTTGCCAGCAAAGATCAAACGTTGTTGGTCAGGGGGAATTCCTTCCTTG 145 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774 || |||||||| | ||||| || || || ||| || | || || || | || || Sbjct 146 TCCTGAATCTTGGTCTTTACTGACTCGATAGTGTCA-GAGCTCTCAACCTCAAGGGTAAT 204 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCA 82809 ||||| || || | ||||| || || |||| || Sbjct 205 AGTCTTACCAGTGAGGGTCTTGACGAAGATCTACA 239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980950561163893