Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30]
69,687 sequences; 205,175,886 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq2782 134 3e-26
seq22 125 1e-23
seq6776 113 9e-20
seq146 111 3e-19
seq30454 87.8 4e-12
>seq2782
Length=10868
Score = 134 bits (148), Expect = 3e-26
Identities = 167/225 (74%), Gaps = 3/225 (1%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| || || ||||| || || || |||||||| || || |||||||| || | | |||
Sbjct 9156 CGAAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGAAAGGGTACGTCCG 9215
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| |||||||| |||||||||||||| || | |||||| || || || |||||||||||
Sbjct 9216 TCCTCTAGTTGCTTTCCAGCAAAGATGAGGCGTTGTTGGTCAGGGGGGATTCCTTCCTTG 9275
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774
|| || ||||| | ||||| || || |||||| || | || || ||||| || ||
Sbjct 9276 TCCTGGATCTTAGTCTTTACGGACTCGATGGTATCA-GAGCTCTCGACCTCCAAGGTAAT 9334
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATT 82819
||||| || || | ||||| || || |||| | ||||| |||
Sbjct 9335 TGTCTTACCAGTGAGGGTCTTGACGAAAATCT-AAATATTAAATT 9378
Score = 109 bits (120), Expect = 1e-18
Identities = 153/212 (72%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| || || ||||| || || || || ||||| || ||||| ||||| || | | ||
Sbjct 9459 CGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGAGAGGGTACGTCCA 9518
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || ||||| |||||||| ||||| | | |||||| || || || || ||||||||
Sbjct 9519 TCCTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGTTGGTCAGGGGGGATGCCTTCCTTG 9578
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774
|| || ||||||| || || ||||| || || || | || || ||||| || ||
Sbjct 9579 TCCTGGATCTTTGTCTTGACGGACTCAATGGTGTCCG-AGCTCTCCACCTCCAAGGTGAT 9637
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCT 82806
||||||||| || | ||||| || || ||||
Sbjct 9638 CGTCTTGCCCGTGAGGGTCTTGACGAAAATCT 9669
Score = 109 bits (120), Expect = 1e-18
Identities = 156/217 (72%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| || || ||||| || || || || ||||| || || |||||||| || | | ||
Sbjct 9775 ACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGAGAGGGTACGTCC 9834
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
|| |||||||| || || |||||||| || | |||||| || || || |||||||||||
Sbjct 9835 ATCCTCTAGTTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGGGGAATTCCTTCCTT 9894
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773
|| || ||||| | || || || || || || | || | || || || | || |
Sbjct 9895 GTCCTGGATCTTGGTCTTCACGGACTCGATGGTGTC-TGAGCTCTCCACCTCGAGGGTGA 9953
Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| |||||||| || | ||||| || || ||||||||
Sbjct 9954 TGGTCTTGCCAGTGAGTGTCTTCACGAAGATCTGCAT 9990
Score = 84.2 bits (92), Expect = 4e-11
Identities = 149/215 (69%), Gaps = 2/215 (1%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| || || ||||| || || || || ||||| || || || || || || | | ||
Sbjct 8835 CGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCA 8894
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || || || || || |||||||| | | |||||| || || || |||||||||||
Sbjct 8895 TCCTCGAGCTGCTTGCCGGCAAAGATCAAACGTTGTTGGTCAGGGGGGATTCCTTCCTTG 8954
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774
|| || ||||| | || || ||||| || ||| || | || || ||||| || ||
Sbjct 8955 TCCTGGATCTTCGTCTTCACGGACTCAATGGTGTCA-GAGCTCTCGACCTCCAAGGTAAT 9013
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCA 82809
|| || || || | ||||| || || |||| ||
Sbjct 9014 GGTTTTACCAGTGAGGGTCTTGACGAAAATCTACA 9048
>seq22
Length=338851
Score = 125 bits (138), Expect = 1e-23
Identities = 157/213 (74%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| || || ||||| || ||||| || ||||| || || || || || || | | |||
Sbjct 331879 CGGAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCA 331938
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || || || || ||||| ||||| || | |||||| || || || |||||||||||
Sbjct 331939 TCCTCGAGCTGCTTGCCAGCGAAGATAAGGCGTTGTTGGTCAGGGGGGATTCCTTCCTTG 331998
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774
||||| ||||||| || || | || || |||||| || | || || ||||| |||||
Sbjct 331999 TCTTGGATCTTTGTCTTCACGCTCTCGATGGTATCA-GAGCTCTCGACCTCCAACGTTAT 332057
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTG 82807
|||||||| || | ||||| || || |||||
Sbjct 332058 AGTCTTGCCAGTGAGAGTCTTGACGAAGATCTG 332090
Score = 114 bits (126), Expect = 3e-20
Identities = 157/217 (72%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| || || ||||||| || || || || || ||||| || || || || | | ||
Sbjct 331315 CGAAGCACCAAGTGCAAGGTGGACTCCTTTTGAATATTGTAGTCGGAGAGGGTGCGTCCA 331374
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || ||||| ||||| || ||||| || | |||||| || || || |||||||||||
Sbjct 331375 TCCTCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGTTGGTCAGGGGGGATTCCTTCCTTG 331434
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774
||||| ||||||| || || | || || |||||| || | || || ||||| || ||
Sbjct 331435 TCTTGGATCTTTGTCTTCACGCTCTCGATGGTATCA-GAGCTCTCGACCTCCAAGGTGAT 331493
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
||||| || || | ||||| || || || ||||||
Sbjct 331494 GGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCATT 331530
Score = 98.7 bits (108), Expect = 2e-15
Identities = 151/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| || || ||||||| || || || || || || || || || || | | |||
Sbjct 330907 CGGAGCACCAAGTGCAAGGTGCTCTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGTCCG 330966
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || || || ||||| || ||||| | | |||||| || || || |||||||||||
Sbjct 330967 TCCTCGAGCTGCTTTCCGGCGAAGATCAAGCGTTGTTGGTCAGGGGGGATTCCTTCCTTG 331026
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774
|| || ||||| | || ||| | || || ||||| || | |||||||| | || ||
Sbjct 331027 TCCTGGATCTTGGTCTTCACACTCTCGATGGTATC-GGAGCTCTCTACTTCGAGGGTGAT 331085
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTG 82807
|||||||| ||||| ||||| || || |||||
Sbjct 331086 GGTCTTGCCAGTCAAGGTCTTCACGAAGATCTG 331118
>seq6776
Length=2740
Score = 113 bits (124), Expect = 9e-20
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
||||| || | |||||| || || || ||||| || || || || || || | | ||
Sbjct 1427 CGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCC 1368
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || || || || || || ||||| || | || || || || || || || |||||
Sbjct 1367 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 1308
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
|| || ||||| || || ||||| || ||||| || | || || || |||| | |||
Sbjct 1307 TCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCGATC 1248
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||||| |||| |||||| || || ||||||||
Sbjct 1247 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1213
>seq146
Length=178297
Score = 111 bits (122), Expect = 3e-19
Identities = 154/213 (72%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| || || ||||| || || || || || || || || || || || || | | ||
Sbjct 157374 CGGAGCACCAAGTGGAGGGTGGACTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGTCCA 157433
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || ||||| ||||| || ||||| || | |||||| || || || ||||| |||||
Sbjct 157434 TCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGTTGTTGGTCAGGGGGAATTCCCTCCTTG 157493
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774
||||||||||| | ||||| | ||||| || ||| || | || ||||| | ||| ||
Sbjct 157494 TCTTGAATCTTAGTCTTTACGCTCTCAATGGTGTCA-GAGCTCTCGACTTCGAGAGTAAT 157552
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTG 82807
|||||||| || | ||||| || || |||||
Sbjct 157553 AGTCTTGCCAGTGAGGGTCTTAACGAAGATCTG 157585
Score = 111 bits (122), Expect = 3e-19
Identities = 155/215 (72%), Gaps = 2/215 (1%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| || || ||||| || || || || ||||| ||||| || || || | | |||
Sbjct 157694 CGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATATTGTAGTCGCTGAGGGTGCGTCCG 157753
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || ||||| |||||||| ||||| || | ||||| || || || ||||| |||||
Sbjct 157754 TCCTCGAGTTGCTTTCCAGCGAAGATGAGGCGCTGTTGGTCAGGGGGAATTCCCTCCTTG 157813
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774
||||||||||||| || || | || || || ||| || | || || ||||| || ||
Sbjct 157814 TCTTGAATCTTTGTCTTGACGCTCTCGATGGTGTCA-GAGCTCTCGACCTCCAACGTGAT 157872
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCA 82809
||||| || || | || || ||||| |||||||
Sbjct 157873 GGTCTTTCCAGTGAGTGTTTTCACAAAAATCTGCA 157907
Score = 98.7 bits (108), Expect = 2e-15
Identities = 159/225 (71%), Gaps = 4/225 (2%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| || || ||||| || || || || ||||| || || || || || || | | ||
Sbjct 156637 CGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCA 156696
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| |||||||| || ||||| ||||| | | |||||| || || || |||||||||||
Sbjct 156697 TCCTCTAGTTGCTTGCCAGCGAAGATCAAACGTTGTTGGTCAGGGGGGATTCCTTCCTTG 156756
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774
|| || ||||| | || ||| || || ||||| || | ||||| || | ||| ||
Sbjct 156757 TCCTGGATCTTGGTCTTGACAGACTCGATGGTATC-GGAGCTCTCTACCTCAAGAGTGAT 156815
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATT 82819
||||| || || | ||||| || || ||||| ||||| |||
Sbjct 156816 GGTCTTTCCAGTGAGGGTCTTGACGAAGATCTG--GTATTACATT 156858
>seq30454
Length=461
Score = 87.8 bits (96), Expect = 4e-12
Identities = 150/215 (70%), Gaps = 2/215 (1%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| || || ||||| || || || || || || ||||| || || || || | | ||
Sbjct 26 CGGAGCACCAAGTGAAGGGTGGACTCCTTTTGAATATTGTAGTCGGAGAGGGTGCGTCCA 85
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || || || || ||||||||||| | | |||||| || || || |||||||||||
Sbjct 86 TCCTCGAGCTGCTTGCCAGCAAAGATCAAACGTTGTTGGTCAGGGGGAATTCCTTCCTTG 145
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774
|| |||||||| | ||||| || || || ||| || | || || || | || ||
Sbjct 146 TCCTGAATCTTGGTCTTTACTGACTCGATAGTGTCA-GAGCTCTCAACCTCAAGGGTAAT 204
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCA 82809
||||| || || | ||||| || || |||| ||
Sbjct 205 AGTCTTACCAGTGAGGGTCTTGACGAAGATCTACA 239
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 980950561163893
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