Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq6776 134 1e-26 seq59190 107 2e-18 seq2782 104 2e-17 seq22 104 2e-17 seq146 98.7 1e-15 seq11258 86.0 6e-12 seq62579 82.4 7e-11 >seq6776 Length=2740 Score = 134 bits (148), Expect = 1e-26 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| || | |||| ||||| ||||||||||| Sbjct 1409 GTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCG 1350 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || ||||||||||| || |||||||| |||||||| |||||| ||| Sbjct 1349 GCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 1290 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||||| | |||||||| || | | || || ||||||||||| || Sbjct 1289 ACATTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTC 1230 Query 133644 TTTACGAAAATCTGCATGG 133662 || ||||| |||||||||| Sbjct 1229 TTCACGAAGATCTGCATGG 1211 >seq59190 Length=243 Score = 107 bits (118), Expect = 2e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 |||||||||||||| || ||| | ||||| ||||| |||||||||||||| || || ||| Sbjct 186 TCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCGGGAGGGATTCCCTCTTTG 127 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| ||| | ||||| | || ||| || || | ||| | Sbjct 126 TCTTGGATCTTGGTCTTGACACTCTCGATAGTGTCAGAGGACTCGACCTCAAGGGTAATT 67 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATGG 133662 || || || || || || || |||||||||||||||| Sbjct 66 GTCTTACCCGTGAGGGTCTTGACGAAAATCTGCATGG 30 >seq2782 Length=10868 Score = 104 bits (114), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||| ||||| || ||||| ||| | ||| | | | |||||||| Sbjct 8844 AAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCA-TCCTCGAG 8902 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| || | || | || || ||||| || ||||| ||||||||||| ||| Sbjct 8903 CTGCTTGCCGGCAAAGATCAAACGTTGTTGGTCAGGGGGGATTCCTTCCTTGTCCTGGAT 8962 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | ||||| ||||| | | ||| || || | ||| | |||||| || Sbjct 8963 CTTCGTCTTCACGGACTCAATGGTGTCAGAGCTCTCGACCTCCAAGGTAATGGTTTTACC 9022 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCA 133659 || || || || |||||||||| || Sbjct 9023 AGTGAGGGTCTTGACGAAAATCTACA 9048 Score = 102 bits (112), Expect = 8e-17 Identities = 146/203 (72%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||| ||||| || || || || | || | | | |||||||| Sbjct 9468 AAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGAGAGGGTACGTCCA-TCCTCGAG 9526 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || ||| | || | || || ||||| || ||||||||||||||||| ||| Sbjct 9527 TTGCTTTCCAGCGAAGATCAAACGTTGTTGGTCAGGGGGGATGCCTTCCTTGTCCTGGAT 9586 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||| ||||| ||||| ||||| | | |||||| || | ||||| || ||||| Sbjct 9587 CTTTGTCTTGACGGACTCAATGGTGTCCGAGCTCTCCACCTCCAAGGTGATCGTCTTGCC 9646 Query 133634 GGTCAGAGTTTTTACGAAAATCT 133656 || || || || |||||||||| Sbjct 9647 CGTGAGGGTCTTGACGAAAATCT 9669 Score = 102 bits (112), Expect = 8e-17 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||| ||||| || |||||||| | || | | | ||||| || Sbjct 9785 AAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGAGAGGGTACGTCCA-TCCTCTAG 9843 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||||| || | || || || || ||||| || || || ||||||||||| ||| Sbjct 9844 TTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGGGGAATTCCTTCCTTGTCCTGGAT 9903 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | ||| | ||||| | | |||||| |||| ||||| ||| ||||| Sbjct 9904 CTTGGTCTTCACGGACTCGATGGTGTCTGAGCTCTCCACCTCGAGGGTGATGGTCTTGCC 9963 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661 || || || || ||||| ||||||||| Sbjct 9964 AGTGAGTGTCTTCACGAAGATCTGCATG 9991 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/204 (70%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 || || | ||||||||||||||| || |||||||| | || ||| |||||| | Sbjct 9165 AAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGAAAGGGT--ACGTCCGTCCTCTA 9222 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 | ||||| || || | ||||| || || ||||| || ||||| ||||||||||| || Sbjct 9223 GTTGCTTTCCAGCAAAGATGAGGCGTTGTTGGTCAGGGGGGATTCCTTCCTTGTCCTGGA 9282 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| ||| | ||| | || || | | ||| || || | ||| | || || | Sbjct 9283 TCTTAGTCTTTACGGACTCGATGGTATCAGAGCTCTCGACCTCCAAGGTAATTGTCTTAC 9342 Query 133633 CGGTCAGAGTTTTTACGAAAATCT 133656 | || || || || |||||||||| Sbjct 9343 CAGTGAGGGTCTTGACGAAAATCT 9366 >seq22 Length=338851 Score = 104 bits (114), Expect = 2e-17 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||| || || |||||||| ||| | ||| | | | |||||||| Sbjct 331324 AAGTGCAAGGTGGACTCCTTTTGAATATTGTAGTCGGAGAGGGTGCGTCCA-TCCTCGAG 331382 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || ||| | || || || || ||||| || ||||| ||||||||||| ||| Sbjct 331383 TTGCTTTCCGGCGAAGATAAGGCGTTGTTGGTCAGGGGGGATTCCTTCCTTGTCTTGGAT 331442 Query 133574 CTTTTGCTTGA-GCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| ||| | ||| ||| | || || | | ||| || || | ||||| ||| || | Sbjct 331443 CTTTGTCTTCACGCT-CTCGATGGTATCAGAGCTCTCGACCTCCAAGGTGATGGTCTTTC 331501 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || ||||| || ||||| Sbjct 331502 CGGTGAGGGTCTTGACGAAGATTTGCAT 331529 Score = 104 bits (114), Expect = 2e-17 Identities = 149/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| ||||| || ||||| ||| | ||| ||| | |||||||| Sbjct 331888 AAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCA-TCCTCGAG 331946 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| | || || || || ||||| || ||||| ||||||||||| ||| Sbjct 331947 CTGCTTGCCAGCGAAGATAAGGCGTTGTTGGTCAGGGGGGATTCCTTCCTTGTCTTGGAT 332006 Query 133574 CTTTTGCTTGA-GCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| ||| | ||| ||| | || || | | ||| || || | || | || |||| Sbjct 332007 CTTTGTCTTCACGCT-CTCGATGGTATCAGAGCTCTCGACCTCCAACGTTATAGTCTTGC 332065 Query 133633 CGGTCAGAGTTTTTACGAAAATCTG 133657 | || ||||| || ||||| ||||| Sbjct 332066 CAGTGAGAGTCTTGACGAAGATCTG 332090 Score = 91.5 bits (100), Expect = 1e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||||||||||||||| || ||| | || | || || ||||| || ||||| |||||||| Sbjct 330966 GTCCTCGAGCTGCTTTCCGGCGAAGATCAAGCGTTGTTGGTCAGGGGGGATTCCTTCCTT 331025 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||| | ||| | || |||| | ||| || |||| ||||| Sbjct 331026 GTCCTGGATCTTGGTCTTCACACTCTCGATGGTATCGGAGCTCTCTACTTCGAGGGTGAT 331085 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTG 133657 ||| ||||| |||| || || ||||| ||||| Sbjct 331086 GGTCTTGCCAGTCAAGGTCTTCACGAAGATCTG 331118 >seq146 Length=178297 Score = 98.7 bits (108), Expect = 1e-15 Identities = 145/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||| || || || ||||| ||| | ||| | | | |||||||| Sbjct 157060 AAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGTCCA-TCCTCGAG 157118 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||||| || |||| | || || |||||||| ||||| ||||||||||| ||| Sbjct 157119 TTGCTTGCCAGCAAAAATCAAACGTTGTTGGTCGGGGGGGATTCCTTCCTTGTCCTGGAT 157178 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| ||| | ||||||| | ||| || || | |||| ||| || || Sbjct 157179 CTTGGTCTTGACGGACTCGATGGTGTCGGAGCTCTCGACCTCAAGAGTGATGGTCTTTCC 157238 Query 133634 GGTCAGAGTTTTTACGAAAATCT 133656 || || || || ||||| |||| Sbjct 157239 AGTGAGGGTCTTGACGAAGATCT 157261 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||| ||||| || ||||| ||| | ||| | | | ||||| || Sbjct 156646 AAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCA-TCCTCTAG 156704 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||||| ||| | || | || || ||||| || ||||| ||||||||||| ||| Sbjct 156705 TTGCTTGCCAGCGAAGATCAAACGTTGTTGGTCAGGGGGGATTCCTTCCTTGTCCTGGAT 156764 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| ||| | || |||| | ||| || || | |||| ||| || || Sbjct 156765 CTTGGTCTTGACAGACTCGATGGTATCGGAGCTCTCTACCTCAAGAGTGATGGTCTTTCC 156824 Query 133634 GGTCAGAGTTTTTACGAAAATCTG 133657 || || || || ||||| ||||| Sbjct 156825 AGTGAGGGTCTTGACGAAGATCTG 156848 >seq11258 Length=1178 Score = 86.0 bits (94), Expect = 6e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 19954 CACGCGCACGTAGCCCTCCTCGCCGTAGTCGGCGCCCCACGAGTTTTTGATCGTCCAGTA 20013 ||||||||||||||||| |||||| |||| | ||||||||||| |||||| |||||| Sbjct 1105 CACGCGCACGTAGCCCTTCTCGCCCCAGTCCTCACCCCACGAGTTCTTGATCACCCAGTA 1046 Query 20014 CGGCACGTTGTTCTCGACGCCGTAGCCCACGAGCAGCACCGCGTGGTTCAGC 20065 ||| || | | | ||| || ||||||||||| ||||||||||| Sbjct 1045 CGGAACCTCACCAGTCATGTTGTACCCAACGAGCAGCACGCCGTGGTTCAGC 994 >seq62579 Length=228 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| || | |||| ||||| ||||||||||| Sbjct 107 GTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCG 166 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| | || || ||||||||||| || |||||||| |||||||| |||||| Sbjct 167 GCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTT 219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482999698183880