Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq22 116 9e-21 seq146 105 2e-17 seq2782 104 6e-17 >seq22 Length=338851 Score = 116 bits (128), Expect = 9e-21 Identities = 150/206 (73%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 206168 TGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTT 206227 ||||| |||| || ||| || ||||| || || || || || ||||| || || || | Sbjct 332094 TGTAC-AGATCTTCGTCAAGACTCTCACTGGCAAGACTATAACGTTGGAGGTCGAGAGCT 332036 Query 206228 CTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACG 206287 |||| || |||| || ||| |||||| ||||| || |||||||| || ||| Sbjct 332035 CTGATACCATCGAGAGCGTGAAGACAAAGATCCAAGACAAGGAAGGAATCCCCCCTGACC 331976 Query 206288 CTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACA 206347 ||| | ||||||||||| || |||||| | || ||||| | || | |||| |||| Sbjct 331975 AACAACGCCTTATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACCCTCTCCGACTACA 331916 Query 206348 ACGTCCAGAAAGAGTCTACTCTTCAC 206373 || ||||||| |||||||| |||||| Sbjct 331915 ACATCCAGAAGGAGTCTACCCTTCAC 331890 Score = 111 bits (122), Expect = 4e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||||||||| || || |||||||| || || || |||||||| |||| Sbjct 332413 AAGACTCTCACAGGAAAGACCATTACTTTGGAGGTCGAGAGCTCTGACACTATCGAGAGT 332354 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || ||||| || ||| ||| | || || ||| Sbjct 332353 GTCAAGACTAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCAACAACGTCTCATTTTC 332294 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| | || ||||||||||| | | || |||||| | ||||| ||||| Sbjct 332293 GCTGGCAAGCAACTCGAGGATGGAAGGACCCTTTCTGACTACAACATTCAGAAGGAGTCC 332234 Query 206365 ACTCTTCACCTTGT 206378 || ||||||||||| Sbjct 332233 ACCCTTCACCTTGT 332220 Score = 105 bits (116), Expect = 2e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| ||||| || ||||| ||||| || || || ||||| || |||| Sbjct 331515 CAAGACCCTCACCGGAAAGACCATCACCTTGGAGGTCGAGAGCTCTGATACCATCGAGAG 331456 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| |||||| ||||| || |||||||| || ||| ||| | |||||||| Sbjct 331455 CGTGAAGACAAAGATCCAAGACAAGGAAGGAATCCCCCCTGACCAACAACGCCTTATCTT 331396 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||||||||| | || |||||| | || | |||| ||||| | || || ||||| Sbjct 331395 CGCCGGAAAGCAACTCGAGGATGGACGCACCCTCTCCGACTACAATATTCAAAAGGAGTC 331336 Query 206364 TAC 206366 || Sbjct 331335 CAC 331333 Score = 91.5 bits (100), Expect = 3e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| || |||||||| || || || || ||||| || |||| || ||| Sbjct 331733 ACCGGAAAGACCATCACTTTAGAGGTCGAGAGCTCTGATACCATCGAGAGCGTGAAGACC 331674 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || || || || || ||| || | | ||||| ||||||||| Sbjct 331673 AAGATCCAAGACAAGGAGGGCATCCCCCCCGACCAACAGCGTTTGATCTTTGCCGGAAAG 331614 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | || |||||| | || ||| ||| |||||| ||||||| ||||| || || ||| Sbjct 331613 CAGCTTGAGGATGGACGCACCTTGAGCGACTACAACATCCAGAAGGAGTCCACCCTCCAC 331554 >seq146 Length=178297 Score = 105 bits (116), Expect = 2e-17 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| ||||| ||||| || ||||| ||||| || || || |||||| Sbjct 157905 CAGATTTTTGTGAAAACACTCACTGGAAAGACCATCACGTTGGAGGTCGAGAGCTCTGAC 157846 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||||||| || || |||||| || ||| || Sbjct 157845 ACCATCGAGAGCGTCAAGACAAAGATTCAAGACAAGGAGGGAATTCCCCCTGACCAACAG 157786 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||| |||||||| | || || ||| | || | ||| ||||| | Sbjct 157785 CGCCTCATCTTCGCTGGAAAGCAACTCGAGGACGGACGCACCCTCAGCGACTACAATATT 157726 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| ||||| || || ||| Sbjct 157725 CAGAAGGAGTCCACCCTCCAC 157705 Score = 102 bits (112), Expect = 2e-16 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || || ||| | ||||| || || |||||||| | || Sbjct 157573 AAGACCCTCACTGGCAAGACTATTACTCTCGAAGTCGAGAGCTCTGACACCATTGAGAGC 157514 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||||||||| || || |||||| || ||| ||| | || |||||| Sbjct 157513 GTAAAGACTAAGATTCAAGACAAGGAGGGAATTCCCCCTGACCAACAACGCCTCATCTTC 157454 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||||||||| | || |||||| | || | |||| |||||| | || || ||||| Sbjct 157453 GCCGGAAAGCAACTCGAGGATGGACGCACCCTCTCCGACTACAACATTCAAAAGGAGTCC 157394 Query 206365 ACTCTTCAC 206373 || || ||| Sbjct 157393 ACCCTCCAC 157385 >seq2782 Length=10868 Score = 104 bits (114), Expect = 6e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| || || || || || ||||| || || || ||||| || |||| || Sbjct 9356 CAAGACCCTCACTGGTAAGACAATTACCTTGGAGGTCGAGAGCTCTGATACCATCGAGTC 9297 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 |||||| ||||| || || || |||||||| || ||| ||| | || ||||| Sbjct 9296 CGTAAAGACTAAGATCCAGGACAAGGAAGGAATCCCCCCTGACCAACAACGCCTCATCTT 9237 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || |||||||| | || || ||| | || | | ||||||||| | ||||||||||| Sbjct 9236 TGCTGGAAAGCAACTAGAGGACGGACGTACCCTTTCTGATTACAACATTCAGAAAGAGTC 9177 Query 206364 TACTCTTCAC 206373 || |||||| Sbjct 9176 CACCCTTCAC 9167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180765593940727