Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq11685 241 2e-57 seq26606 176 6e-38 seq7481 107 3e-17 seq3544 98.7 1e-14 seq9495 95.1 2e-13 seq1429 91.5 2e-12 >seq11685 Length=1128 Score = 241 bits (266), Expect = 2e-57 Identities = 403/576 (70%), Gaps = 9/576 (2%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||||| || || |||||| ||||| || || ||||| |||| ||||| Sbjct 561 GAGCCGCTGCAGCAGGAGAACCCGTTCCGCTACGTTCTCTTCCCAATCCAGTACCATGAC 620 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || ||| | |||| || || ||| || | | ||||| | ||||||| ||||||| Sbjct 621 ATCTGGCGCAAGTAC-AAGGAGCAGGAGAGCTGCATCTGGACGGTCGAGGAGATCGACCT 679 Query 1455836 CGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 ||| ||||| | |||||| |||||| ||||| ||||| || ||||||||||| Sbjct 680 GGGCAACGACATGAAGGACTGGGCAACGCTGAACGACGGGGAGCGGCACTTCATCAAGCA 739 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955 || |||||||| || ||||| |||||| ||||| || |||||| || || |||| Sbjct 740 TGTGCTCGCCTTCTT-CGCCGGCAGCGACGGCATAGTCATCGAGAATCTCGCGCAGCGCT 798 Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCG 1456015 | |||| || || | |||||||||| || || |||||||||||| | || | Sbjct 799 TCATGAGCGACGTGAAGGTGCCAGAGGCGCGCGCATTCTACGGGTTCCAGCTGATGATGG 858 Query 1456016 AAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCG 1456075 | ||||||||||| || || ||||| | ||| | ||||| ||| ||| |||| | | Sbjct 859 AGAACATCCACTCGGAGACGTACTCTGTGCTGCTGGACACGTACATCACGGACAGCGAGG 918 Query 1456076 AGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACT 1456135 ||||| | || | | ||| || | ||| | |||| | ||| ||||| || | Sbjct 919 AGAAGCTGCGGCTGCTGCACGCGATACAGACGATCCCGTGCATCCAGAAGAAGGCGGAGT 978 Query 1456136 GGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTT 1456195 |||| || ||||||| |||| | ||| |||| |||||||| ||||||| Sbjct 979 GGGCCGTGCGGTGGATC----GGGAGCAGCGCGA-GCTTTCAGGAGCGGCTGATCGGCTT 1033 Query 1456196 TGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAA 1456254 |||||| || |||||||| || || || || |||||||| | || ||||| ||||| Sbjct 1034 TGCCGCGGTGGAGGGCATTTTCTTTTCCGGGTCGTTCTGCGCACTGTTCTGGCTGAAGAA 1093 Query 1456255 GCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACG 1456290 |||||| || ||||| || || | || ||||||| Sbjct 1094 GCGCGGTCTGATGCCAGGGCTGACG-TTCAGCAACG 1128 >seq26606 Length=519 Score = 176 bits (194), Expect = 6e-38 Identities = 186/242 (77%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 |||||| || |||||| ||||||||||||||||||||| || | || ||| Sbjct 446 TACTCGGTCTACATCTACCGTGTGCTCAAGCAGGTGCACCCCGACACTGGTGTC---TCC 390 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 || || || | ||||| |||||||||||||| ||||| ||| | |||| ||||||| Sbjct 389 TCGAA--AG-CGATGTCCATCATGAACTCGTTCGTCAATGACGTCTTCGAGCGCATCGCT 333 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 | ||||| ||| ||||||| || |||||||||| ||||||| | ||||| ||| Sbjct 332 GCTGAGGCATCTCGTCTGGCGCACTACAACAAGCGCTCCACGATCTCGTCTCGCGAAATC 273 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 ||||||||||| || |||||| | | ||| || || |||| ||||||||||||||||||| Sbjct 272 CAGACCGCCGTCCGACTGATCCTTCCCGGAGAGCTCGCCAAGCACGCCGTCTCCGAGGGC 213 Query 725139 AC 725140 || Sbjct 212 AC 211 >seq7481 Length=2307 Score = 107 bits (118), Expect = 3e-17 Identities = 230/339 (68%), Gaps = 15/339 (4%) Strand=Plus/Plus Query 165555 GTCATGCGCGCCTATGTCGAAAAGCCGCGCACGACCGTTGGATGGAAGGGCCTGGCCAGT 165614 |||||||||| || |||| |||||||| || || || || ||||||||| || Sbjct 771 GTCATGCGCGTGTACTTCGAGAAGCCGCGAACCACGGTGGGCTGGAAGGGCTATATCAAC 830 Query 165615 GACCCCGATCTTGATGGCTCGTGCCGCCTGGCTGATGGCCTTGATACATCGCGCCGCCTG 165674 ||||| ||| || ||| | |||| | || ||||| | |||||| ||| Sbjct 831 GACCCGCGTCTGGACGGCAGCTTCCGCATCAACGAGGGCCTGCGCGCCGCGCGCCAGCTG 890 Query 165675 CTGCGTGATCTCGTCGTCGACG---TCGACCAACCCGTGGCCGTCGAGTTTCTCAGTCCT 165731 |||| ||| | || ||| ||| || ||| |||| || || ||| || Sbjct 891 CTGC------TCGACATCAACGCGCTCGGCCTGCCCACGGCCACGGAATTCCTCGATCTG 944 Query 165732 CTGGTGGCCCCCTATT--TGGCAGACCTGGTCACGTGGGGCGCCGTCGGTGCGCGCACCA 165789 ||| |||| | ||| | || ||||| || |||||||||| |||| |||||||| | Sbjct 945 CTGA--GCCCGCAATTCATTGCCGACCTCGTGGCGTGGGGCGCGATCGGCGCGCGCACGA 1002 Query 165790 CCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTGCCGCTGCCC-ATTGGCTTCAAA 165848 |||| |||||| ||||| || | || |||| || || ||||| || |||||||| Sbjct 1003 CCGAAAGCCAGAGCCACCGGCAGCTCGCCTCGGGCCTTTCG-TGCCCGATCGGCTTCAAG 1061 Query 165849 AACAGCACCGACGGCAGCGTGGCGACGGCCCTCGATGCC 165887 ||| ||||||||||| ||||| || ||| ||| ||| Sbjct 1062 AACGGCACCGACGGCGGCGTGCAGATCGCCGCCGACGCC 1100 >seq3544 Length=7124 Score = 98.7 bits (108), Expect = 1e-14 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 1032508 GCGAGTCAAAGTCGACGTGCACGATGCCAAAGCGCGGGCCATAGCCAAAGTTCCACTCGA 1032567 ||| ||| | ||||| ||||||| |||||| ||| | ||||||| || ||| |||| Sbjct 3059 GCGTGTCGTAATCGACATGCACGACGCCAAAACGCCGCTCATAGCCGAATGCCCATTCGA 3118 Query 1032568 GATTGTCGAGCAGCGACCACACAAACCAGCCGCGCACGGGCACACCTGCGTCAATGGCGT 1032627 ||||||||||||||||||||| || ||||||||||| ||| || || | || ||| Sbjct 3119 AATTGTCGAGCAGCGACCACACGAAATAGCCGCGCACGTCCACGCCGGCCTTGATCGCGG 3178 Query 1032628 CGGCCAC 1032634 || |||| Sbjct 3179 CGTCCAC 3185 >seq9495 Length=1495 Score = 95.1 bits (104), Expect = 2e-13 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 1601274 GCACCAGCGGCACCTGCGGGTAGCACAGGGCGTGCGACACCGTGTCGATG-GCATGGTCG 1601332 |||||||||| ||||||||| | ||| |||| | ||||| ||| ||||| | | Sbjct 1284 GCACCAGCGGTTTTTGCGGGTAGAAGAGGACGTGGGCGGTGGTGTCCATGCGCATGTT-G 1342 Query 1601333 GCGTT-GAGCGACACGACGGCCTTGCTCTGCTTGCCCATGGCCGTCTGGTAGATGTTGCG 1601391 ||| ||| | || | || || |||||| |||||||| | ||||||| ||||||| Sbjct 1343 AAGTTCGAGGCGTA-GATGCCCATGGCCTGCTTACCCATGGCGGACTGGTAGGTGTTGCG 1401 Query 1601392 CGGCGCCTGGTTGTGGTTGGAAAACGGGATGATGGACGCGCAGGCGCCCAGCATGAGCAG 1601451 ||| | |||||||||||||| ||||||| ||||| ||||| ||| || || | | Sbjct 1402 CGGGGACTGGTTGTGGTTGGGGTACGGGATAATGGAGGCGCAAATGCCGAGAATCATCGA 1461 Query 1601452 CGGGTGGACCTCG 1601464 ||||| | |||| Sbjct 1462 CGGGTCCATCTCG 1474 >seq1429 Length=23345 Score = 91.5 bits (100), Expect = 2e-12 Identities = 222/329 (67%), Gaps = 8/329 (2%) Strand=Plus/Minus Query 1456447 AGGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGAC 1456506 |||| | ||||| ||||| || || || || ||| | |||||| |||||| | | | Sbjct 8102 AGGTCTCCACTGCGACTTCGCTTGCCTCCTTTACTCTATGCTCTCCAACAAACTGAAACC 8043 Query 1456507 CGACGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGA 1456566 || | || ||| ||| || || || | | |||||||||||| ||| || Sbjct 8042 AGAGACCCTAAAATCGATTATCTATGATGCGGTAGCCGTAGAGAAAGAGTTTATCACAGA 7983 Query 1456567 GTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAAT 1456626 | | || ||||| || || || || ||||||||| || |||| |||| ||||| ||| Sbjct 7982 GGCCCTACCGGTCGCCCTGATTGGAATGAACGCCGAAGC-CATGAGCCAATACATCGAA- 7925 Query 1456627 TTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGC--C 1456684 || ||||| || || || | |||||| || | ||| |||| ||| | Sbjct 7924 TTCGTCGCTGATCGACTTTTACTGGCGCTTGGGCAC-CCCAAGGTCTAC--AACGCCAAA 7868 Query 1456685 AACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGC 1456744 ||||| ||| |||||||| | |||||| | | ||||| |||||||||||| || Sbjct 7867 AACCCATTCGACTGGATGGAACTCATCTCGTTGTCCAGAAAGACGAACTTTTTCGAGAGC 7808 Query 1456745 CGCGTG-GCGAGTACGCCAAGGCCGGCGT 1456772 || ||| |||||| || ||| |||| || Sbjct 7807 CGTGTGTCCGAGTATGCAAAGACCGGAGT 7779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7171089760765294