Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30]
69,687 sequences; 205,175,886 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq6776 136 4e-27
seq22 100 3e-16
seq146 93.3 4e-14
seq2782 87.8 2e-12
seq30454 82.4 7e-11
>seq6776
Length=2740
Score = 136 bits (150), Expect = 4e-27
Identities = 158/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583
|| ||||| || | ||| |||||| || |||||||| || | | || || | ||
Sbjct 1425 CAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCCTC 1366
Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643
||||||||||| || || || |||| ||||||||||||| || | || |||||||||
Sbjct 1365 CTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTC 1306
Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703
| |||||| ||||| | | | | ||||||||||| |||||||||| || ||||||
Sbjct 1305 CTGGATCTTGGCCTTCACATTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCGATCGT 1246
Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| || |||| || ||||| || ||||||||
Sbjct 1245 CTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1213
>seq22
Length=338851
Score = 100 bits (110), Expect = 3e-16
Identities = 149/210 (71%), Gaps = 6/210 (3%)
Strand=Plus/Plus
Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586
|||||| || || || ||||||||||| |||||||| |||| | ||| || |||| ||
Sbjct 330912 CACCAAGTGCAAGGTGCTCTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCCTC 330971
Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646
|||||||| || || || ||||| || || ||||| | || | | |||||||||
Sbjct 330972 GAGCTGCTTTCCGGCGAAGATCAAGCGTTGTTGGTCAGGGGGGATTCCTTCCTTGTCCTG 331031
Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGT 35703
|||||| ||||| | | | | || || |||| || || || | ||||| ||
Sbjct 331032 GATCTTGGTCTTCACACTCTCGATGGTATCGGAGCTC---TCTACTTCGAGGGTGATGGT 331088
Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTG 35733
|| || ||||| || ||||| || |||||
Sbjct 331089 CTTGCCAGTCAAGGTCTTCACGAAGATCTG 331118
>seq146
Length=178297
Score = 93.3 bits (102), Expect = 4e-14
Identities = 160/231 (69%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567
|||||||||| | | | |||||| || | || |||||| ||||| ||||| |||
Sbjct 157680 TTCCACCACGAAGGCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATATTGTAGTCGC 157739
Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627
| ||| || |||| || || ||||| || || || || | ||||| ||||| | |
Sbjct 157740 TGAGGGTGCGTCCGTCCTCGAGTTGCTTTCCAGCGAAGATGAGGCGCTGTTGGTCAGGGG 157799
Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATT 35684
||| | ||||||||| |||||| ||| | | | | ||||| |||| |
Sbjct 157800 GAATTCCCTCCTTGTCTTGAATCTTTGTCTTGACGCTCTCGATGGTGTCAGAGCTC---T 157856
Query 35685 CCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCA 35735
| ||||||| |||||| || || || || | ||||||||||| |||||||
Sbjct 157857 CGACCTCCAACGTGATGGTCTTTCCAGTGAGTGTTTTCACAAAAATCTGCA 157907
>seq2782
Length=10868
Score = 87.8 bits (96), Expect = 2e-12
Identities = 160/233 (69%), Gaps = 6/233 (3%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||||| | | |||||| || | || |||||| || ||||||||||| |
Sbjct 9764 CCACCACGTAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGAG 9823
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| ||| || | || || || ||||| || ||||| || | || || ||||| | |||
Sbjct 9824 AGGGTACGTCCATCCTCTAGTTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGGGGA 9883
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCC 35686
| | ||||||||| |||||| ||||| | | | ||||| |||| |||
Sbjct 9884 ATTCCTTCCTTGTCCTGGATCTTGGTCTTCACGGACTCGATGGTGTCTGAGCTC---TCC 9940
Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCT 35739
||||| | ||||| || || || || | || ||||| || |||||||| ||
Sbjct 9941 ACCTCGAGGGTGATGGTCTTGCCAGTGAGTGTCTTCACGAAGATCTGCATGCT 9993
>seq30454
Length=461
Score = 82.4 bits (90), Expect = 7e-11
Identities = 105/145 (72%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567
|||||||||| | | | |||||| || | || |||||||||||| ||||| ||||
Sbjct 12 TTCCACCACGGAGGCGGAGCACCAAGTGAAGGGTGGACTCCTTTTGAATATTGTAGTCGG 71
Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627
| ||| || | || || |||||||| || ||||| ||||| || || ||||| | |
Sbjct 72 AGAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATCAAACGTTGTTGGTCAGGGG 131
Query 35628 GAACGCTCTCCTTGTCCATGATCTT 35652
||| | ||||||||| |||||
Sbjct 132 GAATTCCTTCCTTGTCCTGAATCTT 156
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450400919329960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |