Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1429 113 6e-20 seq42113 86.0 9e-12 >seq1429 Length=23345 Score = 113 bits (124), Expect = 6e-20 Identities = 134/181 (74%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 39727 AGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATC 39786 ||||| | ||| || ||||| ||||||||||| ||||||||||| | | ||| || Sbjct 7518 AGAAATGTGGATACCCTCTACCGCTGCAAATGCTACAAGTCTCTCAGCAAAGCTTCCCTC 7577 Query 39787 ATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTAT 39846 | |||||||| || ||||||||||||| |||||||| |||||||| ||||| || || Sbjct 7578 TT---GTATCCACCTCAGTGCCCAATCAGCCTTCTTCTTCACACAAGGGATTGTCTCAAT 7634 Query 39847 AGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACT 39906 |||||| || || | |||||| | | ||| | ||||| || || || ||||| Sbjct 7635 AGCATTGAACAGTCTGTCTTTTTCTTGTGGGTTTTTGATGTATGTGTCGATCAAAAGACT 7694 Query 39907 A 39907 | Sbjct 7695 A 7695 >seq42113 Length=344 Score = 86.0 bits (94), Expect = 9e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 87322 GTGATAGGTATAGACGAGGGTCAGTTCTTCCCAGACATAGTGGAATTCTGCGAATACATG 87381 || || || || || |||||||| || ||||| || ||||| || |||| | ||| Sbjct 136 GTCATTGGAATTGATGAGGGTCAATTTTTCCCGGATTTAGTGAGCTTTAGCGAGAAAATG 195 Query 87382 GCAAACAATGGAAAAATAGTTATAGTGGCTGCATTAGATGGAACATTTCAACGAAAACCA 87441 || || ||||| | ||| || ||||| ||| ||||||| ||||| || ||||| ||| Sbjct 196 GCCAATGGAGGAAAGACAGTAATTGTGGCAGCACTAGATGGTACATTCCAGCGAAAGCCA 255 Query 87442 TTTACAA-CTATTTCGAATCTTATTCCGTTATCCGAAATGGTAGTAAAACTGACAGCGGT 87500 ||| || | ||| ||| | ||||| | | || | || |||||| || || || Sbjct 256 TTTGGAAGCGTTTTAGAAA-TCATTCCAGTTGCTGAGCTTGTGACAAAACTTACTGCTGT 314 Query 87501 ATGTATGAAATGCTTTAAAGAGGC 87524 |||||| ||||||||||| || Sbjct 315 TTGTATGGTGTGCTTTAAAGATGC 338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686310442330680