Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_027339.1 Length=38389 Score E Sequences producing significant alignments: (Bits) Value seq2388 84.2 5e-12 >seq2388 Length=11216 Score = 84.2 bits (92), Expect = 5e-12 Identities = 178/262 (68%), Gaps = 8/262 (3%) Strand=Plus/Plus Query 19972 GCCTATATAAGTCCATACGCGAAGAGGAAAGGTTGAAAAACTTGTGATACCTTCCAGTGC 20031 ||| | |||||||||||||||||| || | || ||||| |||| || ||||| || Sbjct 6017 GCCAACATAAGTCCATACGCGAAGTGGCAGCGTGCTGAAACTCGTGAAGCCCTCCAGCGC 6076 Query 20032 CAGATTCCATAATTTCCAGCCATTAAATTTTGAGATGCCAGCAACACGCTCTGCGCGTAC 20091 | ||||| | |||||| || ||| || || |||| || | ||| | |||| || Sbjct 6077 GAAGTTCCACAGTTTCCACCCGGAAAACTTCGACCTGCCGGCGAGGCGCGGTTCGCGCAC 6136 Query 20092 ATATTCAACGACATCCGTCTGACCACCCACCCAGCTCAGTATGCCTTTCATGAAAAGATT 20151 |||||| ||||| | ||| | || |||||| | | ||||||||||| | Sbjct 6137 ATATTCGACGACGGCGGTCCGGTACCCGACCCAGGCGAACAGACCTTTCATGAAGCG--- 6193 Query 20152 GCGC---TCAGGCAACAGTTTAATGTTC-TCCACAACCTCACGAGACATGAGTCGAAAAT 20207 |||| || || | | |||| | || | ||||| |||||||| | || | || || | Sbjct 6194 GCGCGTTTCGGGAAGCTGTTTGA-GTGCGTCCACGACCTCACGTGTAATCAAGCGGAAGT 6252 Query 20208 CTCCGACATTTTCCTCGATCTT 20229 | || || |||||| ||||| Sbjct 6253 CGCCCACGTTTTCCGGAATCTT 6274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122621642486794