Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq832 141 3e-28 seq2782 140 1e-27 seq30454 136 1e-26 seq59190 131 5e-25 seq146 113 1e-19 seq22 109 2e-18 seq500 89.7 2e-12 seq66879 84.2 7e-11 >seq832 Length=54740 Score = 141 bits (156), Expect = 3e-28 Identities = 294/429 (69%), Gaps = 8/429 (2%) Strand=Plus/Plus Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || || |||||||| ||||| |||||| || || || |||||||| | |||| | Sbjct 34831 GTGCCCGCCTATTTCAATGACAGCCAGCGCCAGGCCACCAAGGATGCTGGAACCATTTCT 34890 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || || ||||| || | || ||||| || ||||||||||| || ||||| ||||| | Sbjct 34891 GGTTTGAATGTGCTCCGTATCATTAACGAGCCCACTGCTGCCGCTATTGCCTATGGTTTG 34950 Query 349742 GATAA-AATG-AGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTT 349799 || || | || | | || || || || | || || || || || || |||||||| | Sbjct 34951 GACAAGACTGCCGAGGCC--GAGAAGAACGTGCTCATCTTCGACTTGGGAGGTGGTACAT 35008 Query 349800 TTGATGTATCACTACTAACACTTGAAGAG-GGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 ||||||| || || || || | | |||| || | ||||| || || | |||| ||| Sbjct 35009 TTGATGTGTCCCTCCTTAC-CATCGAGAGCGGTGTGTTTGAGGTCAAGTCCACTGGTGGA 35067 Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918 | || |||||||| || || || || ||||| || ||||| || || | | || Sbjct 35068 AACACCCATCTTGGAGGTGAGGACTTCGATAACCGCCTCGTGAACCACTTCATGGAGGAG 35127 Query 349919 TTTAAGCGTCAAGCT-AAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAG 349977 || ||||| |||| | || | || || | || | ||||| || || || || || Sbjct 35128 TTCAAGCG-CAAGTTCAAGAAGGACATCACCGGAAACCAGAGAGCCATCCGCCGTCTCAG 35186 Query 349978 AACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAAT 350037 ||| || || || ||||| ||| | |||| || || | ||||| |||| || ||||| Sbjct 35187 AACCGCCTGCGAGCGTGCGAAGAGAACCTTGTCTTCCAGCACCCAGGCCTCCATCGAAAT 35246 Query 350038 TGATTCTCT 350046 || || || Sbjct 35247 CGACTCCCT 35255 >seq2782 Length=10868 Score = 140 bits (154), Expect = 1e-27 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | || || | ||||| || |||||||| ||||| || ||||| Sbjct 9140 CATTCCACCACGAAGGCGAAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATC 9199 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || || || || ||||| |||||||||||||| || ||||| || ||||| Sbjct 9200 AGAAAGGGTACGTCCGTCCTCTAGTTGCTTTCCAGCAAAGATGAGGCGTTGTTGGTCAGG 9259 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || |||||||| || ||||| || |||| ||||| || || | |||||| || Sbjct 9260 GGGGATTCCTTCCTTGTCCTGGATCTTAGTCTTTACGGACTCGATGGTATCAGAGCTCTC 9319 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCT 140733 || || | |||| |||||| || || || || || || ||||||| Sbjct 9320 GACCTCCAAGGTAATTGTCTTACCAGTGAGGGTCTTGACGAAAATCT 9366 Score = 123 bits (136), Expect = 8e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||||| | || || | ||||| || ||||| || || || || ||||| Sbjct 9760 CATGCCACCACGTAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATC 9819 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || ||||| || ||||| || || |||||||| |||||||| || ||||| Sbjct 9820 AGAGAGGGTACGTCCATCCTCTAGTTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGG 9879 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||||||||| || ||||| || || | || || || || | || || || Sbjct 9880 GGGAATTCCTTCCTTGTCCTGGATCTTGGTCTTCACGGACTCGATGGTGTCTGAGCTCTC 9939 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| || || ||||| || || || |||||||| Sbjct 9940 CACCTCGAGGGTGATGGTCTTGCCAGTGAGTGTCTTCACGAAGATCTGCAT 9990 >seq30454 Length=461 Score = 136 bits (150), Expect = 1e-26 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | || || | ||||| || ||||| ||||||||||| || || Sbjct 10 CATTCCACCACGGAGGCGGAGCACCAAGTGAAGGGTGGACTCCTTTTGAATATTGTAGTC 69 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| || || || || ||||||||||| | |||||| || ||||| Sbjct 70 GGAGAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATCAAACGTTGTTGGTCAGG 129 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||||||||| || |||||||| || | ||||| || || | ||||| || Sbjct 130 GGGAATTCCTTCCTTGTCCTGAATCTTGGTCTTTACTGACTCGATAGTGTCAGAGCTCTC 189 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCA 140736 ||| ||||| |||| ||||| || || || || || || || |||| || Sbjct 190 AACCTCAAGGGTAATAGTCTTACCAGTGAGGGTCTTGACGAAGATCTACA 239 >seq59190 Length=243 Score = 131 bits (144), Expect = 5e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || || || ||||| ||||| || || || ||||| | || || ||||| Sbjct 243 AGCACGAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGTCCATCC 184 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || |||||||| ||||| ||||| || || || ||||| ||||| ||||| || Sbjct 183 TCGAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCGGGAGGGATTCCCTCTTTGTCT 124 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || | || ||| | || || | ||||| | || || ||||| |||| |||| Sbjct 123 TGGATCTTGGTCTTGACACTCTCGATAGTGTCAGAGGACTCGACCTCAAGGGTAATTGTC 64 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || || ||||||||||| Sbjct 63 TTACCCGTGAGGGTCTTGACGAAAATCTGCAT 32 >seq146 Length=178297 Score = 113 bits (124), Expect = 1e-19 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | || || | || || || ||||| || |||||||| || || Sbjct 157678 CATTCCACCACGAAGGCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATATTGTAGTC 157737 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || || || || ||||| |||||||| ||||| || || || || ||||| Sbjct 157738 GCTGAGGGTGCGTCCGTCCTCGAGTTGCTTTCCAGCGAAGATGAGGCGCTGTTGGTCAGG 157797 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||||| || || || ||||| || | || || | || || | ||||| || Sbjct 157798 GGGAATTCCCTCCTTGTCTTGAATCTTTGTCTTGACGCTCTCGATGGTGTCAGAGCTCTC 157857 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCA 140736 || || | || | |||||||| || |||||||| ||||||||||||| Sbjct 157858 GACCTCCAACGTGATGGTCTTTCCAGTGAGTGTTTTCACAAAAATCTGCA 157907 >seq22 Length=338851 Score = 109 bits (120), Expect = 2e-18 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 140541 GTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCA 140600 || ||||| ||||||||||| || || || | || || ||||| || ||||| ||||| Sbjct 331333 GTGGACTCCTTTTGAATATTGTAGTCGGAGAGGGTGCGTCCATCCTCGAGTTGCTTTCCG 331392 Query 140601 GCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTT 140660 || ||||| || ||||| || ||||| || |||||||| || || || || || | || Sbjct 331393 GCGAAGATAAGGCGTTGTTGGTCAGGGGGGATTCCTTCCTTGTCTTGGATCTTTGTCTTC 331452 Query 140661 ACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTT 140720 || | || || | |||||| || || || | || | ||||||||||| || || Sbjct 331453 ACGCTCTCGATGGTATCAGAGCTCTCGACCTCCAAGGTGATGGTCTTTCCGGTGAGGGTC 331512 Query 140721 TTTACAAAAATCTGCATT 140738 || || || || |||||| Sbjct 331513 TTGACGAAGATTTGCATT 331530 Score = 84.2 bits (92), Expect = 7e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| |||||||| | | || || | || || || ||||| || || || || | Sbjct 331523 TTTGCATTCCACCACGGAGGCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGT 331582 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || || || ||||| ||||| || ||||| |||||||| | ||| || || | Sbjct 331583 AGTCGCTCAAGGTGCGTCCATCCTCAAGCTGCTTTCCGGCAAAGATCAAACGCTGTTGGT 331642 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || || || || || || | || || | || || | |||||| Sbjct 331643 CGGGGGGGATGCCCTCCTTGTCTTGGATCTTGGTCTTCACGCTCTCGATGGTATCAGAGC 331702 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCA 140736 || || || | || | ||||||||||| | || || || ||||||| || Sbjct 331703 TCTCGACCTCTAAAGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTACA 331756 >seq500 Length=88253 Score = 89.7 bits (98), Expect = 2e-12 Identities = 163/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 349655 GCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCC 349714 ||||||||||| || || ||| ||||| | || || || | || || || || ||| Sbjct 36978 GCAACAAAAGACGCAGGGGCCATCGCGGGACTCAACGTGCTGCGCATCATCAACGAGCCC 36919 Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774 || |||||||| ||||| || || || || |||| | || || || || || || Sbjct 36918 ACCGCTGCAGCCATTGCGTACGGCCTGGACAAAAAAGGCGAATCCGAGAAGAACATCCTC 36859 Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834 ||||| || || || ||||| || || || || || || || ||| | || | || || Sbjct 36858 ATTTTCGACTTGGGAGGTGGCACGTTCGACGTTTCGCTGCTCACAATCGAGGGTGGCGTT 36799 Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCG 349893 || || || || || || | ||| | || || | || || || ||||| || ||||| Sbjct 36798 TTCGAGGTGAAGGCGACGGGTGGAAACACGCACTTGGGAGGTGAGGATTTCGACAATCG 36740 >seq66879 Length=210 Score = 84.2 bits (92), Expect = 7e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 ||||| || | || | || ||||| || || || ||| ||||| || || || || Sbjct 64 ATACCTCCTCTCAAGCGGAGGACAAGGTGCAGTGTGCTCTCCTTTTGGATGTTGTAGTCG 123 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 || || || ||||| || | || |||||||| ||||| | ||| || || ||||| Sbjct 124 CTCAAAGTGCGACCATCCTCCAACTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCAGGG 183 Query 140628 GGAATTCCTTCTTTATCCTGAATTTT 140653 || ||||||||||| ||||||||||| Sbjct 184 GGGATTCCTTCTTTGTCCTGAATTTT 209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1513901482853661