Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_028103.1 Length=32939 Score E Sequences producing significant alignments: (Bits) Value seq61051 104 5e-18 >seq61051 Length=235 Score = 104 bits (114), Expect = 5e-18 Identities = 169/236 (72%), Gaps = 8/236 (3%) Strand=Plus/Plus Query 6096 TGGTCAGAAAAAACAGtttttttATTGTCCAGTTTGGTAGCGAAGGAGCCGTATAGGGCG 6155 ||||||||||| ||| | |||| |||| || ||||| || || || ||||| |||||| Sbjct 7 TGGTCAGAAAAGACAATCTTTTG--TGTCAAGCTTGGTGGCAAACGACCCGTAGAGGGCG 64 Query 6156 TTGGAAAGCAGTTTTGCAATGGATCTCAGCGTTTGATTTTTGTCTTTGTCGGCTTTTTCT 6215 ||||| |||| || || ||||| | ||| ||||| |||| | ||||| || Sbjct 65 TTGGACAGCAACTTGGCGATGGAGCGCAGGGTTTGGTTTT--GCGCGATCGGCGCGCTCC 122 Query 6216 TTGGCGGCGATGTTGAGCTGCACATATTCCCTGGCTACGCATTTCCACTGAGGAAAAACG 6275 ||||| |||||||| |||||||| ||||| | || ||||| ||| | || ||| || Sbjct 123 TTGGCCGCGATGTT-AGCTGCACGTATTCGCGCGCAACGCACCGCCA-TTCGGGAAAGCG 180 Query 6276 GTAGTGCGTTCATCTGGAATCAACCGCACTTTCCAGCCTCGGTTGTGCAAGGTGAC 6331 || ||||| || | || | || |||| ||| || || |||||| |||||| Sbjct 181 GTGGTGCGCTC-GCGGGCACCAGGTGCACGCGCCAACCGAGG-TGTGCAGGGTGAC 234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 105196074664494