Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_028105.1 Length=35159 Score E Sequences producing significant alignments: (Bits) Value seq61051 228 2e-55 >seq61051 Length=235 Score = 228 bits (252), Expect = 2e-55 Identities = 201/240 (84%), Gaps = 8/240 (3%) Strand=Plus/Plus Query 6011 TCCATCTGGTCGGCAAAAACGATTTTCTTGTTGTCGAGCTTGGTGGCGAACGACCCGTAG 6070 ||||||||||| | ||| || || || |||| ||| ||||||||||| |||||||||||| Sbjct 1 TCCATCTGGTCAGAAAAGACAATCTT-TTGT-GTCAAGCTTGGTGGCAAACGACCCGTAG 58 Query 6071 AGGGCGTTGGAGAGCAGTTTGGCGATGGAGCGCAGGGTCTGGTTCTTGTCGCGGTCGGCC 6130 ||||||||||| |||| |||||||||||||||||||| ||||| ||| |||| ||||| Sbjct 59 AGGGCGTTGGACAGCAACTTGGCGATGGAGCGCAGGGTTTGGTT-TTG-CGCGATCGGCG 116 Query 6131 TTTTCCTTGGCGGCGATGTTGAGCTGCACGTACTCGCGCGCCAGACAGCGCCAGGCTGGA 6190 |||||||| |||||||| ||||||||||| |||||||| | || ||||| | ||| Sbjct 117 CGCTCCTTGGCCGCGATGTT-AGCTGCACGTATTCGCGCGCAACGCACCGCCATTCGGGA 175 Query 6191 AAGACGGTTGTGCGTTCGTCGGGCAGCAGGCGCACGCGCCAGCCGCGGTTGTGCAGGGTG 6250 ||| |||| ||||| ||| |||||| |||| |||||||||| ||| || ||||||||||| Sbjct 176 AAG-CGGTGGTGCGCTCG-CGGGCACCAGGTGCACGCGCCAACCGAGG-TGTGCAGGGTG 232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 112294195869174