Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_028107.1 Length=34064 Score E Sequences producing significant alignments: (Bits) Value seq61051 205 2e-48 >seq61051 Length=235 Score = 205 bits (226), Expect = 2e-48 Identities = 193/239 (81%), Gaps = 8/239 (3%) Strand=Plus/Plus Query 5714 TCCATTTGGTCAGAAAAAACAATCTTTTTATTGTCAAGTTTCGTGGCAAACGACCCGTAG 5773 ||||| ||||||||||| |||||||||| ||||||| || |||||||||||||||||| Sbjct 1 TCCATCTGGTCAGAAAAGACAATCTTTTG--TGTCAAGCTTGGTGGCAAACGACCCGTAG 58 Query 5774 AGGGCGTTAGATAGCAATTTGGCAATGGAACGTAAAGTTTGAtttttttCGCGGTCGGCC 5833 |||||||| || ||||| ||||| ||||| || | ||||| |||| |||| ||||| Sbjct 59 AGGGCGTTGGACAGCAACTTGGCGATGGAGCGCAGGGTTTG--GTTTTGCGCGATCGGCG 116 Query 5834 CGCTCCTTGGCCGCGATGTTAAGTTGTACGTACTCCCGGGCCACGCAGCGCCACTCCGGG 5893 |||||||||||||||||||| || || ||||| || || || ||||| ||||| | |||| Sbjct 117 CGCTCCTTGGCCGCGATGTT-AGCTGCACGTATTCGCGCGCAACGCACCGCCA-TTCGGG 174 Query 5894 AAAACAGTAGTGCGCTCGTCGGGCACTATACGGACGCTCCAGCCCCTGTTGTGCAGGGT 5952 ||| | || ||||||||| ||||||| | | |||| ||| || | |||||||||| Sbjct 175 AAAGCGGTGGTGCGCTCG-CGGGCACCAGGTGCACGCGCCA-ACCGAGGTGTGCAGGGT 231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 108793095545244