Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq11685 127 2e-24 seq2730 111 2e-19 >seq11685 Length=1128 Score = 127 bits (140), Expect = 2e-24 Identities = 320/481 (67%), Gaps = 14/481 (3%) Strand=Plus/Plus Query 59617 TCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATT 59676 ||||| | ||||||||||| ||||| | | ||| ||||||| |||| | ||| || Sbjct 655 TCTGGACGGTCGAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGCAACGCTGAACG 714 Query 59677 ACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTG 59736 ||| |||| ||| ||||||||| || || ||||||||||| | || || || || | Sbjct 715 ACGGGGAGCGGCACTTCATCAAGCATGTGCTCGCCTTCTTCGCCGGCAGCGACGGCATAG 774 Query 59737 TGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGT 59796 | || || ||| | | | ||| | || || || | | ||||| || | | Sbjct 775 TCATCGAGAATCTCGCGCAGCGCTTCATGAGCGACGTGAAGGTGCCAGAGGCGCGCGCAT 834 Query 59797 TCTACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCG 59856 |||||| || ||| | | | ||| |||||||| ||||||||||| | || | | Sbjct 835 TCTACGGGTTCCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCTGTGCTGCTGG 894 Query 59857 ATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTG-GTCTGTTCCGTGCCATAGAGACG-TC 59914 | | || ||| ||| || ||||| |||| | ||| | | || ||| ||||| || Sbjct 895 ACACGTACATCACGGACAGCGAGGAGAA-GCTGCGGCTGCTGCACGCGATACAGACGATC 953 Query 59915 CCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGCATC--- 59971 || ||| | | | || || || |||||| ||| |||||| | |||||| | Sbjct 954 CCGTGCA-TCCAGAAGAAGGCGGAGTGGGCCGTGCGGTGGAT-----CGGGAGCAGCGCG 1007 Query 59972 --ATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCG 60029 ||| | || || || | ||||| ||||| || || ||||| || || ||| Sbjct 1008 AGCTTTCAGGAGCGGCTGATCGGCTTTGCCGCGGTGGAGGGCATTTTCTTTTCCGGGTCG 1067 Query 60030 TTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAAC 60089 ||||| || | |||||||| || ||||| || || ||||| || |||| ||| |||| Sbjct 1068 TTCTGCGCACTGTTCTGGCTGAAGAAGCGCGGTCTGATGCCAGGGCTGACGTTCAGCAAC 1127 Query 60090 G 60090 | Sbjct 1128 G 1128 >seq2730 Length=9686 Score = 111 bits (122), Expect = 2e-19 Identities = 230/340 (68%), Gaps = 7/340 (2%) Strand=Plus/Minus Query 79380 CTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTC 79439 || |||||| ||||| || ||||| |||||| | |||| || || || Sbjct 5324 CTTCATGAACAGGTCGGGAATCCAGTTCGCCGTGTTCATGTCGTGGGTGCGGCGGCGGTC 5265 Query 79440 GTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAG 79499 ||||||| |||| ||||||||||| || || ||||||| |||||||| ||||| Sbjct 5264 GTCGCCCGTGTTCTTGCGCAGCTCGAGGAATTCTTCGATGTCGAGGTGCCACGATTCCAG 5205 Query 79500 ATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTT 79559 ||| | | || ||||||||||||| |||||||||| ||| | ||||||| Sbjct 5204 GTAGGCGCACACCGCGCCCTTGCGCTTGC---CGCCCTGGTTCACGGCCACAGCCGTGTC 5148 Query 79560 GTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGAC--GCCGTTCGTCCCGTTGATT 79617 ||| | || || | || || | ||| | ||||| |||||| || || ||||| Sbjct 5147 GTTCACGACCTTCAGGAACGGAACCACGCCTT--GCGACTTGCCGTTGGTGCCCTTGATG 5090 Query 79618 CGTGTACCGCTCGCCCGAATGTTCGAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAG 79677 | | |||| ||| || | | || |||| | | || | || |||| |||| ||| Sbjct 5089 TGCGAACCGAGCGCGCGCACGCGCGTCCAGTCGTTGCCCAGACCGCCGGCAAACTTCGAG 5030 Query 79678 ATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGA 79717 | ||||| |||||||||| ||||||||||| |||| Sbjct 5029 AGCAGCGCGTTGTCCTTGAGCGCTTCGTAGATGCCGTCGA 4990 Score = 84.2 bits (92), Expect = 2e-11 Identities = 223/338 (66%), Gaps = 7/338 (2%) Strand=Plus/Plus Query 19289 GAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATC 19348 || ||||||||||| |||||||||| ||||| |||| |||| |||| ||| | Sbjct 4992 GACGGCATCTACGAAGCGCTCAAGGACAACGCGCTGCTCTCGAAGTTTGCCGGCGGTCTG 5051 Query 19349 GGGATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGG--AG 19406 || | | |||| || | || || ||| | | ||||| || || ||||| || Sbjct 5052 GGCAACGACTGGACGCGCGTGCGCGCGCTCGGTTCGCACATCAAGGGCACCAACGGCAAG 5111 Query 19407 TAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACC 19466 | || | || | || || | || ||| | ||| ||||||| | ||| |||| Sbjct 5112 TCGC--AAGGCGTGGTTCCGTTCCTGAAGGTCGTGAACGACACGGCTGTGGCCGTGAACC 5169 Query 19467 AGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACG 19526 | ||||||||| ||||||||| || | | |||||| || | |||||| ||| Sbjct 5170 A---GGGCGGCAAGCGCAAGGGCGCGGTGTGCGCCTACCTGGAATCGTGGCACCTCGACA 5226 Query 19527 TCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACC 19586 || || |||||||| |||||| |||| ||| ||||| ||| | |||| Sbjct 5227 TCGAAGAATTCCTCGAGCTGCGCAAGAACACGGGCGACGACCGCCGCCGCACCCACGACA 5286 Query 19587 TCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAG 19624 | |||||| |||||||| ||||| |||||| || Sbjct 5287 TGAACACGGCGAACTGGATTCCCGACCTGTTCATGAAG 5324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548046986903280