Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq6015 154 2e-32 seq1562 105 7e-18 seq11685 100 3e-16 seq1392 98.7 1e-15 seq2730 91.5 2e-13 >seq6015 Length=3340 Score = 154 bits (170), Expect = 2e-32 Identities = 252/358 (70%), Gaps = 14/358 (4%) Strand=Plus/Plus Query 124546 TCGACTGC-TGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCG 124604 ||| |||| |||| ||| |||||||| ||| |||||| || |||| ||||||||| Sbjct 1018 TCGTCTGCCTGCAGCATGCGCCACATGCCTTCGACGTATTCGGAGGCGTAGCCCCAGTCG 1077 Query 124605 CGCTTGGCATCCAGGTTTCCGAGCTCGA-----TTG-GCTTGGCCGTCTTGTTCCACTCC 124658 |||||||| || ||||| |||||||||| ||| ||||| | |||| || | Sbjct 1078 CGCTTGGCGTCGAGGTTGCCGAGCTCGAGCATGTTGAGCTTGCCGAGCTTGATC---TTG 1134 Query 124659 GCCAAACCCAGT--GTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGT 124716 || | | | || || ||||||||||| || |||||| ||||| || ||||||| Sbjct 1135 GCGA--CGCTGTCGGTGATCTTGCGCGTGACGAACTCGCGCCCGCGCAGCGGCGACTCGT 1192 Query 124717 GGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCA 124776 | ||||| |||||||| | ||| || || |||| |||||||| ||||| || Sbjct 1193 GATTGAAGAGAATGCCGCTCGTCGCGAAGATGTCGTAAGACTCGCGATAGTTGACGGTGG 1252 Query 124777 TCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTT 124836 ||| | | || ||||||| ||||||||||||||| || || ||||| || |||| | Sbjct 1253 ACCAGTGTGCGAACAGCTTGGCCACGCCATAGGGGCTGCGCGGATAGAACGGCGTGTCCT 1312 Query 124837 CATTTTGGGTAGGTTGCTGAATCTTCCCAAACATCTCCGAAGTACCCGCCTGATAGAA 124894 | ||| | | ||| | ||| || ||||| || || || ||||||||||| Sbjct 1313 CGCATTGCGGAATCGCCTGGACCTTGCCGAACATTTCGGAGGTCGAAGCCTGATAGAA 1370 Score = 136 bits (150), Expect = 4e-27 Identities = 241/349 (69%), Gaps = 13/349 (4%) Strand=Plus/Plus Query 159004 TGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCA 159063 || |||||| |||||||| | |||||||| || |||| ||||||||||||||||| Sbjct 1027 TGCAGCATGCGCCACATGCCTTCGACGTATTCGGAGGCGTAGCCCCAGTCGCGCTTGGCG 1086 Query 159064 TCCATGTTCCCGAGCTCGA------TGACTTTTCCAGACTTTTTCCACTCAGCCAGACCG 159117 || | ||| |||||||||| ||| || || ||| || | || | | | Sbjct 1087 TCGAGGTTGCCGAGCTCGAGCATGTTGAGCTTGCCGAGCTTGATC---TTGGCGACGCTG 1143 Query 159118 AGCGTGATCTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAGA 159177 |||||||||||||| || ||||| |||||| | |||||| || || || ||| Sbjct 1144 TCGGTGATCTTGCGCGTGACGAACTCGCGCCCGCGCAGCGGCGACTCGTGATTGAAGAGA 1203 Query 159178 ATGCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCCA 159237 |||||| | ||||| | || || |||||||| || || || ||||| | | Sbjct 1204 ATGCCGCTCGTCGCGAAGATGTCGTAAGACTCGCGATAGTTGACGGTGGACCAGTGTGCG 1263 Query 159238 AAGAGCTTGGAGACGCCGTATGGACTCCGAGGATAAAATG--GTGTCCCCTCATTTTGAA 159295 || ||||||| ||||| || || || || ||||| || | |||||| | |||| | | Sbjct 1264 AACAGCTTGGCCACGCCATAGGGGCTGCGCGGATAGAACGGCGTGTCCTCGCATTGCGGA 1323 Query 159296 TTGGTTCCTGAACCTTTCCAAACATTTCACTCGTCCCAGCCTGATAAAA 159344 | | |||| ||||| || |||||||| ||| ||||||||| || Sbjct 1324 ATCG--CCTGGACCTTGCCGAACATTTCGGAGGTCGAAGCCTGATAGAA 1370 >seq1562 Length=20706 Score = 105 bits (116), Expect = 7e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 117385 CAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGC 117444 || ||| || || |||||||| | ||| |||| |||||| || || || || || | Sbjct 9304 CAAGTTATTAGCACCCACAAAATCTTGCGCCATGTTGACTATTGTCCCGTGCAGCGATTC 9245 Query 117445 CTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCAT 117504 ||| || |||||||||||||| || ||||| ||||| ||||| ||||| ||||||||||| Sbjct 9244 CTCGCCGTGGTGATACGCCGTGTGTTCCGCGACGTACCCCGCGAGCTGCGCCACCTTCAT 9185 Query 117505 GTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCT 117545 || ||||| | | | |||| || || || | ||||| Sbjct 9184 CTCCTGCGTCAAGCCCCTTTTGAAGCTCGCGTAGAGCACCT 9144 Score = 100 bits (110), Expect = 3e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 152112 GTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTC 152171 ||| || || ||||| |||| || |||| || || || || || ||||| | || Sbjct 9301 GTTATTAGCACCCACAAAATCTTGCGCCATGTTGACTATTGTCCCGTGCAGCGATTCCTC 9242 Query 152172 ACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC 152231 ||||||||||||||||| || ||||||| ||| ||||| | ||||||||||||||| || Sbjct 9241 GCCGTGGTGATACGCCGTGTGTTCCGCGACGTACCCCGCGAGCTGCGCCACCTTCATCTC 9182 Query 152232 CGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCT 152269 | ||||| | | | |||| | ||||| | ||||| Sbjct 9181 CTGCGTCAAGCCCCTTTTGAAGCTCGCGTAGAGCACCT 9144 >seq11685 Length=1128 Score = 100 bits (110), Expect = 3e-16 Identities = 307/472 (65%), Gaps = 12/472 (3%) Strand=Plus/Minus Query 74799 AACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCA 74858 |||| || || ||||| || || |||||||||| ||| || | || ||||| || || Sbjct 1120 AACGTCAGCCCTGGCATCAGACCGCGCTTCTTCAGCCAGAACAGTGCGCAGAACGACCCG 1061 Query 74859 CTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA-----CGGTG 74913 ||||| ||||| || || |||||| ||| || || | | || || || Sbjct 1060 GAAAAGAAAATGCCCTCCACCGCGGCAAAGCCGATCAGCCGCTCCTGAAAGCTCGCGCTG 1001 Query 74914 CATCGGAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTA 74972 | | || |||| | ||||| || || || | | || ||| |||| || Sbjct 1000 CTCCCGA-----TCCACCGCACGGCCCACTCCGCCTT-CTTCTGGATGCACGGGATCGTC 947 Query 74973 TCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATA 75032 | ||||| || | || | |||||| ||| ||| ||| | | |||| | || Sbjct 946 TGTATCGCGTGCAGCAGCCGCAGCTTCTCCTCGCTGTCCGTGATGTACGTGTCCAGCAGC 887 Query 75033 AGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGC 75092 | |||||||||||||| || || ||| | | | |||| || ||||||| | ||| Sbjct 886 ACAGAGTACGTCTCCGAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAGAATGCGCGC 827 Query 75093 GCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCG 75152 ||||||| | || || || | || | ||| |||||| ||||| |||||| Sbjct 826 GCCTCTGGCACCTTCACGTCGCTCATGAAGCGCTGCGCGAGATTCTCGATGACTATGCCG 767 Query 75153 TCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGT 75212 || | ||||||| || || || || ||||| ||||| ||||| |||| | || Sbjct 766 TCGCTGCCGGCGAAGAAGGCGAGCACATGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGC 707 Query 75213 TTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGA 75264 | |||| ||||||| ||| ||| || ||||||||||||||||||| Sbjct 706 GTTGCCCAGTCCTTCATGTCGTTGCCCAGGTCGATCTCCTCGACCGTCCAGA 655 >seq1392 Length=22165 Score = 98.7 bits (108), Expect = 1e-15 Identities = 125/171 (73%), Gaps = 6/171 (4%) Strand=Plus/Minus Query 124671 GTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAG---ACTCGTGGTTGAACAGA 124727 || ||||||||||| || ||| | ||| ||||| | |||||||||||||||| Sbjct 12828 GTGATCTTGCGCGTGACGAAC---GTCTCGCCTCGCTGCGGCGACTCGTGGTTGAACAGG 12772 Query 124728 ATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCA 124787 ||||| | || || | || || | || |||||||||||| |||| |||| ||| | Sbjct 12771 ATGCCGTTGCATGCGTAGATGCCATGCGCCTCGCGGTAGTTGACCGTCGTCCAGTACGCG 12712 Query 124788 AAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCA 124838 || ||||| | ||| ||||||| || || || ||||| || ||| ||||| Sbjct 12711 AACAGCTTCGCCACCGCATAGGGACTGCGCGGATAGAACGGCGTGGTTTCA 12661 >seq2730 Length=9686 Score = 91.5 bits (100), Expect = 2e-13 Identities = 240/363 (66%), Gaps = 10/363 (3%) Strand=Plus/Plus Query 53283 CCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGG 53342 ||||||| || |||||||| | || ||| | | | | ||| | ||| |||| ||| Sbjct 4912 CCACGCCCACGCTGTTCAATTCGGGCACGCACCGCTCGCAGCTCTCGTCGTGCTACCTCA 4971 Query 53343 TGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACA 53402 | || | || ||| |||||||||||||||| |||||||||| || | Sbjct 4972 CGACGGTTGCCGACGACC---TCGACGGCATCTACGAAGCGCTCAAGGACAACGCGCTGC 5028 Query 53403 TCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGTCCGTGCGAACGGCACAC 53462 |||| |||| | || ||| | || | | |||| || ||| || ||| ||| | | Sbjct 5029 TCTCGAAGTTTGCCGGCGGTCTGGGCAACGACTGGACGCGCGTGCGCGCGCTCGGTTCGC 5088 Query 53463 CAATCAAGGGGACGAACGGC--GTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAA 53520 |||||||| || |||||| ||||| | || | || || | || ||| | || Sbjct 5089 ACATCAAGGGCACCAACGGCAAGTCGC--AAGGCGTGGTTCCGTTCCTGAAGGTCGTGAA 5146 Query 53521 CAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTA 53580 | ||||||| | ||| |||||| || || ||||||||||| || | | ||| Sbjct 5147 CGACACGGCTGTGGCCGTGAACCAG---GGCGGCAAGCGCAAGGGCGCGGTGTGCGCCTA 5203 Query 53581 CCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGA 53640 ||| || |||||||| |||||| || || ||||||||||| ||| ||| || Sbjct 5204 CCTGGAATCGTGGCACCTCGACATCGAAGAATTCCTCGAGCTGCGCAAGAACACGGGCGA 5263 Query 53641 CGA 53643 ||| Sbjct 5264 CGA 5266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546739326982600