Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_028449.1 Length=63569 Score E Sequences producing significant alignments: (Bits) Value seq2099 172 2e-38 >seq2099 Length=12992 Score = 172 bits (190), Expect = 2e-38 Identities = 559/852 (66%), Gaps = 22/852 (3%) Strand=Plus/Minus Query 2844 AACGCCTGCTCCAGCGCATCCAGCACGAATGTCGTTTC-CATAGACGATGAGACCCGCCA 2902 |||||||| | |||||| ||||||||||| ||| ||| ||| || | ||| || ||||| Sbjct 6408 AACGCCTGGTTCAGCGCGTCCAGCACGAA-GTCAGTTCGCATCGAGGCTGACACGCGCCA 6350 Query 2903 CCCCACGATGTATCCGGCAAACACATCAATGATAAACGCCACATAGACGAAGCCCTGCCA 2962 || ||||| | ||||||||||| | | || ||||| || || ||||| ||| Sbjct 6349 ACCGACGATACGCCGCGCAAACACATCGGTCACGAAGGCCACGTACACAAAGCCGGACCA 6290 Query 2963 TGTGCTGACGTAAGTAAAATCAGCCACCCACAGCTGGTCAGGTCGTTCTGCCACGAACTG 3022 ||| | | || |||||||| || ||||||||| || || || || ||| |||||| Sbjct 6289 TGTCCAGCAATAGGTAAAATCCGCGACCCACAGCGCGTTGGGCCGATCGGCCTGGAACTG 6230 Query 3023 ACGGTTTACGCGGT----CGCCTGCGGCAACGGCT-TTCCGGCTGATGGTCGTACGGACC 3077 ||| || || |||| || |||||| || | || |||| || || | || | Sbjct 6229 ACGTTTGACCCGGTCCAGCGGGCGCGGCACCGCATCGTCGCGCTG--CGTTGTCCTGATC 6172 Query 3078 TTTTTACCCCGGAGAACACCGGCAAGTCCCATAACCGCCATGAGACGTGCCACTGTACAT 3137 || || | ||||| | || ||||| || ||| || || || || || || Sbjct 6171 CGGCGCCCACGCCGCACACCTTCGAGGCCCATCGCCTTCATCAGGCGCGCAACCGTGCAG 6112 Query 3138 CTGGCCACCCTGATTCCTTCCCGTAACAACTGACGCCAGACTTTACGCACACCGTACACC 3197 | || ||| | | || || || | |||||| |||||||| || |||||||| ||||| Sbjct 6111 CGCGCGACCTTCACGCCATCGCGCAGCAACTGGCGCCAGACCTTGCGCACACCATACACG 6052 Query 3198 TGATGATTTTCATCGTATACGCGCTGTATCTCTCTCTTCAGCCAGTCGTCGTGCTGCGCA 3257 | || | || | || | | || | |||||| | ||| | ||| Sbjct 6051 CCAAAGTTCTTGTCCCAGACCACCCGGATGAGGCCCTTCAGTTGAGCATCGCGACACGCT 5992 Query 3258 CGGGCACTGCGTTTATCCGGAT-GATGTCGCTGT--TGC-TGACAATGGTAATACGTTGA 3313 || || | || ||||||| | || ||| || || || | |||||||||| || Sbjct 5991 CGCGCTGGCCATTGCTCCGGATCGCTG-CGCCGTCCGGCGTGCC---GGTAATACGTCGA 5936 Query 3314 CGGGGCAATATGCAGTTCGCTGCATACCGGTCCGACCCCGTACTGCTCACGCAGCTTATC 3373 ||| || || |||| || ||| | ||| |||| ||||| || || ||| || Sbjct 5935 CGGCGCGATCGGCAGCAGGCGGCAGATCGGCTCGACACCGTAGACGTCGCGATGCTCGTC 5876 Query 3374 CAGCAGTGGCATCATTTTTTCCAGAGGCGGTCGAACTCCGCCTTCGCAAAATAAGCGGAA 3433 | | | ||||| ||| | ||||||||| |||||||| || ||||| ||||| Sbjct 5875 GATGAACGCAATCATGGCTTCGATCGGCGGTCGAGCTCCGCCTGTGCGAAATACGCGGAG 5816 Query 3434 GCCTGGCGAAGGATATCGTTACTGCGGCGCAGTTCACGATTTTCACGTTCCAGCTCTTTC 3493 |||| |||||| || ||||| ||||| ||| ||||| || || ||||| || ||| Sbjct 5815 GCCTTGCGAAGAATCTCGTTGGCCGTGCGCAATTCGCGATTCTCGCGCTCCAGTTCCTTC 5756 Query 3494 AGACGCTGACGTTCAGCGCTGGTGAGCCCACCATCACCGCCCCCGGTATCCCGCTCATGC 3553 || ||| | || | | || |||| | ||| | | || || ||| |||||| | Sbjct 5755 AGGCGCGCCAGCTCGGGAGTCGT-CGCCCCCGATCGCTGGCCACG--ATCACGCTCAGCC 5699 Query 3554 TGGCGAACCCAGACACGCAGAGTCTCCGGCGTACA-GCCAATCTTTGGGGCAATGGAACA 3612 ||| | |||| || || ||||| ||| ||| || ||||| | ||| || || | Sbjct 5698 TGGATGATCCAGTTGCGAAGCGTCTCACGCG-ACATCCCCATCTTCGAGGCGATCGAGCG 5640 Query 3613 AATTGCCGCCCACTGTGAGTCATATTCATCCTGACTTTCCAGAACCATACGAATCGCCCG 3672 || ||| ||| ||| | || ||||| | || || | ||||| || | |||||| Sbjct 5639 GATCGCCACCCCCTGCGTCTCGTATTCGTGTTGGTGCTCGAAGACCATTCGGACCGCCCG 5580 Query 3673 CTGACGGACTTC 3684 || ||| || || Sbjct 5579 CTCACGAACCTC 5568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 203123338610710