Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30]
69,687 sequences; 205,175,886 total letters
Query= NC_028449.1
Length=63569
Score E
Sequences producing significant alignments: (Bits) Value
seq2099 172 2e-38
>seq2099
Length=12992
Score = 172 bits (190), Expect = 2e-38
Identities = 559/852 (66%), Gaps = 22/852 (3%)
Strand=Plus/Minus
Query 2844 AACGCCTGCTCCAGCGCATCCAGCACGAATGTCGTTTC-CATAGACGATGAGACCCGCCA 2902
|||||||| | |||||| ||||||||||| ||| ||| ||| || | ||| || |||||
Sbjct 6408 AACGCCTGGTTCAGCGCGTCCAGCACGAA-GTCAGTTCGCATCGAGGCTGACACGCGCCA 6350
Query 2903 CCCCACGATGTATCCGGCAAACACATCAATGATAAACGCCACATAGACGAAGCCCTGCCA 2962
|| ||||| | ||||||||||| | | || ||||| || || ||||| |||
Sbjct 6349 ACCGACGATACGCCGCGCAAACACATCGGTCACGAAGGCCACGTACACAAAGCCGGACCA 6290
Query 2963 TGTGCTGACGTAAGTAAAATCAGCCACCCACAGCTGGTCAGGTCGTTCTGCCACGAACTG 3022
||| | | || |||||||| || ||||||||| || || || || ||| ||||||
Sbjct 6289 TGTCCAGCAATAGGTAAAATCCGCGACCCACAGCGCGTTGGGCCGATCGGCCTGGAACTG 6230
Query 3023 ACGGTTTACGCGGT----CGCCTGCGGCAACGGCT-TTCCGGCTGATGGTCGTACGGACC 3077
||| || || |||| || |||||| || | || |||| || || | || |
Sbjct 6229 ACGTTTGACCCGGTCCAGCGGGCGCGGCACCGCATCGTCGCGCTG--CGTTGTCCTGATC 6172
Query 3078 TTTTTACCCCGGAGAACACCGGCAAGTCCCATAACCGCCATGAGACGTGCCACTGTACAT 3137
|| || | ||||| | || ||||| || ||| || || || || || ||
Sbjct 6171 CGGCGCCCACGCCGCACACCTTCGAGGCCCATCGCCTTCATCAGGCGCGCAACCGTGCAG 6112
Query 3138 CTGGCCACCCTGATTCCTTCCCGTAACAACTGACGCCAGACTTTACGCACACCGTACACC 3197
| || ||| | | || || || | |||||| |||||||| || |||||||| |||||
Sbjct 6111 CGCGCGACCTTCACGCCATCGCGCAGCAACTGGCGCCAGACCTTGCGCACACCATACACG 6052
Query 3198 TGATGATTTTCATCGTATACGCGCTGTATCTCTCTCTTCAGCCAGTCGTCGTGCTGCGCA 3257
| || | || | || | | || | |||||| | ||| | |||
Sbjct 6051 CCAAAGTTCTTGTCCCAGACCACCCGGATGAGGCCCTTCAGTTGAGCATCGCGACACGCT 5992
Query 3258 CGGGCACTGCGTTTATCCGGAT-GATGTCGCTGT--TGC-TGACAATGGTAATACGTTGA 3313
|| || | || ||||||| | || ||| || || || | |||||||||| ||
Sbjct 5991 CGCGCTGGCCATTGCTCCGGATCGCTG-CGCCGTCCGGCGTGCC---GGTAATACGTCGA 5936
Query 3314 CGGGGCAATATGCAGTTCGCTGCATACCGGTCCGACCCCGTACTGCTCACGCAGCTTATC 3373
||| || || |||| || ||| | ||| |||| ||||| || || ||| ||
Sbjct 5935 CGGCGCGATCGGCAGCAGGCGGCAGATCGGCTCGACACCGTAGACGTCGCGATGCTCGTC 5876
Query 3374 CAGCAGTGGCATCATTTTTTCCAGAGGCGGTCGAACTCCGCCTTCGCAAAATAAGCGGAA 3433
| | | ||||| ||| | ||||||||| |||||||| || ||||| |||||
Sbjct 5875 GATGAACGCAATCATGGCTTCGATCGGCGGTCGAGCTCCGCCTGTGCGAAATACGCGGAG 5816
Query 3434 GCCTGGCGAAGGATATCGTTACTGCGGCGCAGTTCACGATTTTCACGTTCCAGCTCTTTC 3493
|||| |||||| || ||||| ||||| ||| ||||| || || ||||| || |||
Sbjct 5815 GCCTTGCGAAGAATCTCGTTGGCCGTGCGCAATTCGCGATTCTCGCGCTCCAGTTCCTTC 5756
Query 3494 AGACGCTGACGTTCAGCGCTGGTGAGCCCACCATCACCGCCCCCGGTATCCCGCTCATGC 3553
|| ||| | || | | || |||| | ||| | | || || ||| |||||| |
Sbjct 5755 AGGCGCGCCAGCTCGGGAGTCGT-CGCCCCCGATCGCTGGCCACG--ATCACGCTCAGCC 5699
Query 3554 TGGCGAACCCAGACACGCAGAGTCTCCGGCGTACA-GCCAATCTTTGGGGCAATGGAACA 3612
||| | |||| || || ||||| ||| ||| || ||||| | ||| || || |
Sbjct 5698 TGGATGATCCAGTTGCGAAGCGTCTCACGCG-ACATCCCCATCTTCGAGGCGATCGAGCG 5640
Query 3613 AATTGCCGCCCACTGTGAGTCATATTCATCCTGACTTTCCAGAACCATACGAATCGCCCG 3672
|| ||| ||| ||| | || ||||| | || || | ||||| || | ||||||
Sbjct 5639 GATCGCCACCCCCTGCGTCTCGTATTCGTGTTGGTGCTCGAAGACCATTCGGACCGCCCG 5580
Query 3673 CTGACGGACTTC 3684
|| ||| || ||
Sbjct 5579 CTCACGAACCTC 5568
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 203123338610710
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |