Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq146 118 7e-22 seq22 109 3e-19 seq6776 104 1e-17 seq59190 100 2e-16 seq30454 95.1 8e-15 seq62579 84.2 1e-11 >seq146 Length=178297 Score = 118 bits (130), Expect = 7e-22 Identities = 164/227 (72%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | |||||| ||||| ||| |||||| ||||| || || || Sbjct 157682 CCACCACGAAGGCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATATTGTAGTCGCTG 157741 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || ||||| || || || || || | ||||||||||| || || Sbjct 157742 AGGGTGCGTCCGTCCTCGAGTTGCTTTCCAGCGAAGATGAGGCGCTGTTGGTCAGGGGGA 157801 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||||| ||| ||||| || ||| | || ||||| |||||| || Sbjct 157802 ATTCCCTCCTTGTCT-TGAATCTTTGTCTTGACGCTCTCGATGGTGTCAGAGCTCTCGAC 157860 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCA 34705 |||| || || || || || || | ||||||||||||||||||| Sbjct 157861 CTCCAACGTGATGGTCTTTCCAGTGAGTGTTTTCACAAAAATCTGCA 157907 Score = 113 bits (124), Expect = 3e-20 Identities = 162/226 (72%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||| || | |||||| ||||| ||| ||||||||||||||| || || || Sbjct 157361 GCCACCACGAAGGCGGAGCACCAAGTGGAGGGTGGACTCCTTTTGAATGTTGTAGTCGGA 157420 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | || || ||||| || ||||| || || | || |||||||| || || Sbjct 157421 GAGGGTGCGTCCATCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGTTGTTGGTCAGGGGG 157480 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||||| ||| || || || ||| | ||| ||||| |||||| | Sbjct 157481 AATTCCCTCCTTGTCT-TGAATCTTAGTCTTTACGCTCTCAATGGTGTCAGAGCTCTCGA 157539 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTG 34703 |||| | || || || || || || | || || || || ||||| Sbjct 157540 CTTCGAGAGTAATAGTCTTGCCAGTGAGGGTCTTAACGAAGATCTG 157585 >seq22 Length=338851 Score = 109 bits (120), Expect = 3e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC 34535 || ||| || | ||| || | |||||| || | |||||||||||||| ||||| || || Sbjct 330891 GTTGCCTCCACGAAGGCGGAGCACCAAGTGCAAGGTGCTCTCCTTTTGGATGTTGTAGTC 330950 Query 34536 TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGG 34595 || || || || |||| || || || || ||||| || || || || |||||||| || Sbjct 330951 GGAGAGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAAGCGTTGTTGGTCAGG 331010 Query 34596 CGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCT 34654 || | ||| |||||||| |||| || || || || | || || || ||||| Sbjct 331011 GGGGATTCCTTCCTTGTCCTGGATC-TTGGTCTTCACACTCTCGATGGTATCGGAGCTCT 331069 Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTG 34703 | ||||| | ||| || || || || || || || ||||| || ||||| Sbjct 331070 CTACTTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTG 331118 Score = 105 bits (116), Expect = 4e-18 Identities = 158/220 (72%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--TGAAAGTGTTC 34546 || || | |||||| ||||| ||| |||||| || ||||| || || | || ||| | Sbjct 331540 AGGCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTG--C 331597 Query 34547 GCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCT 34606 | | || ||||| || || |||||||| || |||||||||||||| || || | |||| Sbjct 331598 GTCCATCCTCAAGCTGCTTTCCGGCAAAGATCAAACGCTGTTGGTCGGGGGGGATGCCCT 331657 Query 34607 CCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACG 34665 |||||||| |||| || || || ||| | || || || |||||| || || | Sbjct 331658 CCTTGTCTTGGATC-TTGGTCTTCACGCTCTCGATGGTATCAGAGCTCTCGACCTCTAAA 331716 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCA 34705 || || || || ||||| || || || || ||||||| || Sbjct 331717 GTGATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTACA 331756 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | |||||| || | ||| |||||||||||| || || || || Sbjct 331303 CCTCCGCGAAGGCGAAGCACCAAGTGCAAGGTGGACTCCTTTTGAATATTGTAGTCGGAG 331362 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || ||||| || ||||| || || | || |||||||| || || Sbjct 331363 AGGGTGCGTCCATCCTCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGTTGGTCAGGGGGG 331422 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||||||| |||| ||||| || ||| | || || || |||||| || Sbjct 331423 ATTCCTTCCTTGTCTTGGATC-TTTGTCTTCACGCTCTCGATGGTATCAGAGCTCTCGAC 331481 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || || ||||| | || || || || || ||||| Sbjct 331482 CTCCAAGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 331529 Score = 91.5 bits (100), Expect = 9e-14 Identities = 156/224 (70%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | ||| | || || ||| |||||| |||||||| || || ||| Sbjct 332202 CCTCCACGAAGGCGGAGCACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAA 332261 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || | | || || ||||| || || || || || | ||| |||||||| || || Sbjct 332262 AGGGTCCTTCCATCCTCGAGTTGCTTGCCAGCGAAAATGAGACGTTGTTGGTCAGGGGGG 332321 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| |||| || || || || | || ||||| |||||| || Sbjct 332322 ATTCCCTCCTTGTCCTGGATC-TTAGTCTTGACACTCTCGATAGTGTCAGAGCTCTCGAC 332380 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCT 34702 |||| || || || || || || | || ||||| ||||||| Sbjct 332381 CTCCAAAGTAATGGTCTTTCCTGTGAGAGTCTTCACGAAAATCT 332424 >seq6776 Length=2740 Score = 104 bits (114), Expect = 1e-17 Identities = 172/243 (71%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 ||||||| | || |||| ||||| || || ||| |||||| || ||||| || || | Sbjct 1441 CGCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCG 1382 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 | || || || | || || || || || ||||| || || | ||||| |||||||||| Sbjct 1381 AGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCG 1322 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTC 34655 | | ||||||||||| |||| || | || || | || ||||| ||| ||| Sbjct 1321 GGATGCCCTCCTTGTCCTGGATC-TTGGCCTTCACATTCTCGATCGTGTCGCTCG-GCTC 1264 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATTGT 34715 ||| |||| | ||||| || ||||| | ||| ||||| || ||||||||| || | || Sbjct 1263 CACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGGTGGTGGT 1204 Query 34716 ATG 34718 || Sbjct 1203 GTG 1201 >seq59190 Length=243 Score = 100 bits (110), Expect = 2e-16 Identities = 149/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| ||| ||||||||| ||||| || || ||||| || || | || || || || Sbjct 234 TGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGTCCATCCTCGAGCTGC 175 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || || || || || | |||||||||||| || || | |||||| |||||| |||| || Sbjct 174 TTTCCAGCGAAGATGAGACGCTGTTGGTCGGGAGGGATTCCCTCTTTGTCTTGGATC-TT 116 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || || || | || ||||| | ||| || || | ||| || || ||||| || Sbjct 115 GGTCTTGACACTCTCGATAGTGTCAGAGGACTCGACCTCAAGGGTAATTGTCTTACCCGT 56 Query 34683 TAACGTTTTCACAAAAATCTGCATGTTGA 34711 | || || || |||||||||||| ||| Sbjct 55 GAGGGTCTTGACGAAAATCTGCATGGTGA 27 >seq30454 Length=461 Score = 95.1 bits (104), Expect = 8e-15 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | |||||| || || ||| |||||||||||| || || || || || || || Sbjct 23 AGGCGGAGCACCAAGTGAAGGGTGGACTCCTTTTGAATATTGTAGTCGGAGAGGGTGCGT 82 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || ||||| || ||||| |||||||| || || | ||| ||| Sbjct 83 CCATCCTCGAGCTGCTTGCCAGCAAAGATCAAACGTTGTTGGTCAGGGGGAATTCCTTCC 142 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668 ||||| ||||| |||| || || ||||| |||||| || || | ||| Sbjct 143 TTGTCCTGAATCTTGGTCTTTACTGACTCGATAGTGTCAGAGCTCTCAACCTCAAGGGTA 202 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCA 34705 || || ||||| || | || || || || |||| || Sbjct 203 ATAGTCTTACCAGTGAGGGTCTTGACGAAGATCTACA 239 >seq62579 Length=228 Score = 84.2 bits (92), Expect = 1e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | || |||| ||||| || || ||| |||||| || ||||| || || || Sbjct 76 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGA 135 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | || || || || || ||||| || || | ||||| ||||||||||| Sbjct 136 GAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGG 195 Query 34599 CACTCCCTCCTTGTCTGTGATCTT 34622 | ||||||||||| |||||| Sbjct 196 GATGCCCTCCTTGTCCTGGATCTT 219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314462296905071