Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30]
69,687 sequences; 205,175,886 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq146 118 7e-22
seq22 109 3e-19
seq6776 104 1e-17
seq59190 100 2e-16
seq30454 95.1 8e-15
seq62579 84.2 1e-11
>seq146
Length=178297
Score = 118 bits (130), Expect = 7e-22
Identities = 164/227 (72%), Gaps = 2/227 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | ||| || | |||||| ||||| ||| |||||| ||||| || || ||
Sbjct 157682 CCACCACGAAGGCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATATTGTAGTCGCTG 157741
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || |||| || ||||| || || || || || | ||||||||||| || ||
Sbjct 157742 AGGGTGCGTCCGTCCTCGAGTTGCTTTCCAGCGAAGATGAGGCGCTGTTGGTCAGGGGGA 157801
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| ||||||||||||| ||| ||||| || ||| | || ||||| |||||| ||
Sbjct 157802 ATTCCCTCCTTGTCT-TGAATCTTTGTCTTGACGCTCTCGATGGTGTCAGAGCTCTCGAC 157860
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCA 34705
|||| || || || || || || | |||||||||||||||||||
Sbjct 157861 CTCCAACGTGATGGTCTTTCCAGTGAGTGTTTTCACAAAAATCTGCA 157907
Score = 113 bits (124), Expect = 3e-20
Identities = 162/226 (72%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| || | ||| || | |||||| ||||| ||| ||||||||||||||| || || ||
Sbjct 157361 GCCACCACGAAGGCGGAGCACCAAGTGGAGGGTGGACTCCTTTTGAATGTTGTAGTCGGA 157420
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
|| || || | || || ||||| || ||||| || || | || |||||||| || ||
Sbjct 157421 GAGGGTGCGTCCATCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGTTGTTGGTCAGGGGG 157480
Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657
| ||||||||||||| ||| || || || ||| | ||| ||||| |||||| |
Sbjct 157481 AATTCCCTCCTTGTCT-TGAATCTTAGTCTTTACGCTCTCAATGGTGTCAGAGCTCTCGA 157539
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTG 34703
|||| | || || || || || || | || || || || |||||
Sbjct 157540 CTTCGAGAGTAATAGTCTTGCCAGTGAGGGTCTTAACGAAGATCTG 157585
>seq22
Length=338851
Score = 109 bits (120), Expect = 3e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC 34535
|| ||| || | ||| || | |||||| || | |||||||||||||| ||||| || ||
Sbjct 330891 GTTGCCTCCACGAAGGCGGAGCACCAAGTGCAAGGTGCTCTCCTTTTGGATGTTGTAGTC 330950
Query 34536 TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGG 34595
|| || || || |||| || || || || ||||| || || || || |||||||| ||
Sbjct 330951 GGAGAGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAAGCGTTGTTGGTCAGG 331010
Query 34596 CGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCT 34654
|| | ||| |||||||| |||| || || || || | || || || |||||
Sbjct 331011 GGGGATTCCTTCCTTGTCCTGGATC-TTGGTCTTCACACTCTCGATGGTATCGGAGCTCT 331069
Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTG 34703
| ||||| | ||| || || || || || || || ||||| || |||||
Sbjct 331070 CTACTTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTG 331118
Score = 105 bits (116), Expect = 4e-18
Identities = 158/220 (72%), Gaps = 6/220 (3%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--TGAAAGTGTTC 34546
|| || | |||||| ||||| ||| |||||| || ||||| || || | || ||| |
Sbjct 331540 AGGCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTG--C 331597
Query 34547 GCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCT 34606
| | || ||||| || || |||||||| || |||||||||||||| || || | ||||
Sbjct 331598 GTCCATCCTCAAGCTGCTTTCCGGCAAAGATCAAACGCTGTTGGTCGGGGGGGATGCCCT 331657
Query 34607 CCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACG 34665
|||||||| |||| || || || ||| | || || || |||||| || || |
Sbjct 331658 CCTTGTCTTGGATC-TTGGTCTTCACGCTCTCGATGGTATCAGAGCTCTCGACCTCTAAA 331716
Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCA 34705
|| || || || ||||| || || || || ||||||| ||
Sbjct 331717 GTGATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTACA 331756
Score = 102 bits (112), Expect = 5e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | ||| || | |||||| || | ||| |||||||||||| || || || ||
Sbjct 331303 CCTCCGCGAAGGCGAAGCACCAAGTGCAAGGTGGACTCCTTTTGAATATTGTAGTCGGAG 331362
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | || || ||||| || ||||| || || | || |||||||| || ||
Sbjct 331363 AGGGTGCGTCCATCCTCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGTTGGTCAGGGGGG 331422
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| ||| ||||||||| |||| ||||| || ||| | || || || |||||| ||
Sbjct 331423 ATTCCTTCCTTGTCTTGGATC-TTTGTCTTCACGCTCTCGATGGTATCAGAGCTCTCGAC 331481
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|||| ||| || || || ||||| | || || || || || |||||
Sbjct 331482 CTCCAAGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 331529
Score = 91.5 bits (100), Expect = 9e-14
Identities = 156/224 (70%), Gaps = 2/224 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | ||| || | ||| | || || ||| |||||| |||||||| || || |||
Sbjct 332202 CCTCCACGAAGGCGGAGCACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAA 332261
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || | | || || ||||| || || || || || | ||| |||||||| || ||
Sbjct 332262 AGGGTCCTTCCATCCTCGAGTTGCTTGCCAGCGAAAATGAGACGTTGTTGGTCAGGGGGG 332321
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| |||||||||||| |||| || || || || | || ||||| |||||| ||
Sbjct 332322 ATTCCCTCCTTGTCCTGGATC-TTAGTCTTGACACTCTCGATAGTGTCAGAGCTCTCGAC 332380
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCT 34702
|||| || || || || || || | || ||||| |||||||
Sbjct 332381 CTCCAAAGTAATGGTCTTTCCTGTGAGAGTCTTCACGAAAATCT 332424
>seq6776
Length=2740
Score = 104 bits (114), Expect = 1e-17
Identities = 172/243 (71%), Gaps = 4/243 (2%)
Strand=Plus/Minus
Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537
||||||| | || |||| ||||| || || ||| |||||| || ||||| || || |
Sbjct 1441 CGCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCG 1382
Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597
| || || || | || || || || || ||||| || || | ||||| ||||||||||
Sbjct 1381 AGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCG 1322
Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTC 34655
| | ||||||||||| |||| || | || || | || ||||| ||| |||
Sbjct 1321 GGATGCCCTCCTTGTCCTGGATC-TTGGCCTTCACATTCTCGATCGTGTCGCTCG-GCTC 1264
Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATTGT 34715
||| |||| | ||||| || ||||| | ||| ||||| || ||||||||| || | ||
Sbjct 1263 CACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGGTGGTGGT 1204
Query 34716 ATG 34718
||
Sbjct 1203 GTG 1201
>seq59190
Length=243
Score = 100 bits (110), Expect = 2e-16
Identities = 149/209 (71%), Gaps = 2/209 (1%)
Strand=Plus/Minus
Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563
||||| ||| ||||||||| ||||| || || ||||| || || | || || || ||
Sbjct 234 TGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGTCCATCCTCGAGCTGC 175
Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623
|| || || || || | |||||||||||| || || | |||||| |||||| |||| ||
Sbjct 174 TTTCCAGCGAAGATGAGACGCTGTTGGTCGGGAGGGATTCCCTCTTTGTCTTGGATC-TT 116
Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682
|| || || | || ||||| | ||| || || | ||| || || ||||| ||
Sbjct 115 GGTCTTGACACTCTCGATAGTGTCAGAGGACTCGACCTCAAGGGTAATTGTCTTACCCGT 56
Query 34683 TAACGTTTTCACAAAAATCTGCATGTTGA 34711
| || || || |||||||||||| |||
Sbjct 55 GAGGGTCTTGACGAAAATCTGCATGGTGA 27
>seq30454
Length=461
Score = 95.1 bits (104), Expect = 8e-15
Identities = 151/217 (70%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| || | |||||| || || ||| |||||||||||| || || || || || || ||
Sbjct 23 AGGCGGAGCACCAAGTGAAGGGTGGACTCCTTTTGAATATTGTAGTCGGAGAGGGTGCGT 82
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || || || ||||| || ||||| |||||||| || || | ||| |||
Sbjct 83 CCATCCTCGAGCTGCTTGCCAGCAAAGATCAAACGTTGTTGGTCAGGGGGAATTCCTTCC 142
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668
||||| ||||| |||| || || ||||| |||||| || || | |||
Sbjct 143 TTGTCCTGAATCTTGGTCTTTACTGACTCGATAGTGTCAGAGCTCTCAACCTCAAGGGTA 202
Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCA 34705
|| || ||||| || | || || || || |||| ||
Sbjct 203 ATAGTCTTACCAGTGAGGGTCTTGACGAAGATCTACA 239
>seq62579
Length=228
Score = 84.2 bits (92), Expect = 1e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
|||||| | || |||| ||||| || || ||| |||||| || ||||| || || ||
Sbjct 76 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGA 135
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
|| || || | || || || || || ||||| || || | ||||| |||||||||||
Sbjct 136 GAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGG 195
Query 34599 CACTCCCTCCTTGTCTGTGATCTT 34622
| ||||||||||| ||||||
Sbjct 196 GATGCCCTCCTTGTCCTGGATCTT 219
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314462296905071
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