Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq146 125 6e-24 seq59190 109 5e-19 seq6776 109 5e-19 seq2782 105 6e-18 seq30454 98.7 9e-16 seq22 95.1 1e-14 >seq146 Length=178297 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26991 CAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGAC 27050 ||||| || || || || || || |||||| |||||||||| ||||| || || ||| Sbjct 157585 CAGATCTTCGTTAAGACCCTCACTGGCAAGACTATTACTCTCGAAGTCGAGAGCTCTGAC 157526 Query 27051 TCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAG 27110 | ||||||| || || || ||||||||||| || || || || || || ||||| Sbjct 157525 ACCATTGAGAGCGTAAAGACTAAGATTCAAGACAAGGAGGGAATTCCCCCTGACCAACAA 157466 Query 27111 CGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATT 27170 || | || | |||||| || ||| | || || | ||| | ||||| ||||||||| Sbjct 157465 CGCCTCATCTTCGCCGGAAAGCAACTCGAGGATGGACGCACCCTCTCCGACTACAACATT 157406 Query 27171 CAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| ||| | || ||||| | || | || |||||||| Sbjct 157405 CAAAAGGAGTCCACCCTCCACTTGGTGCTCCGCCTTCGTGGTGGCAT 157359 Score = 105 bits (116), Expect = 6e-18 Identities = 159/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 26992 AGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACT 27051 |||| || || || || || || || ||| | || |||||||| || || |||||| Sbjct 157261 AGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACTCTTGAGGTCGAGAGCTCCGACA 157202 Query 27052 CGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGC 27111 | || ||| ||||| || || || ||||| ||||| || || ||||| ||||| | Sbjct 157201 CCATCGAGTCCGTCAAGACCAAGATCCAGGACAAGGAAGGAATCCCCCCCGACCAACAAC 157142 Query 27112 GTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTC 27171 |||| || | || ||||| ||| | || || | ||| | ||||| |||||||| | Sbjct 157141 GTTTGATTTTTGCTGGCAAGCAACTCGAGGATGGACGCACCCTCTCCGACTACAACATCC 157082 Query 27172 AAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||| ||| | || ||||| | || | || ||||| || Sbjct 157081 AAAAGGAGTCCACCCTCCACTTGGTGCTCCGCCTTCGTGGTGGAAT 157036 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26989 TGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCG 27048 ||||||| ||||| ||||| || || || ||| | || || | || || || || | Sbjct 157907 TGCAGATTTTTGTGAAAACACTCACTGGAAAGACCATCACGTTGGAGGTCGAGAGCTCTG 157848 Query 27049 ACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAAC 27108 || | || |||| ||||| ||| ||||||||||| || || || || || || |||| Sbjct 157847 ACACCATCGAGAGCGTCAAGACAAAGATTCAAGACAAGGAGGGAATTCCCCCTGACCAAC 157788 Query 27109 AGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACA 27168 |||| | || | ||| || || ||| | || ||| | ||| | ||| ||||| | Sbjct 157787 AGCGCCTCATCTTCGCTGGAAAGCAACTCGAGGACGGACGCACCCTCAGCGACTACAATA 157728 Query 27169 TTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| |||||||| ||| | || ||||| | || | || ||||| || Sbjct 157727 TTCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGCCTTCGTGGTGGAAT 157679 >seq59190 Length=243 Score = 109 bits (120), Expect = 5e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| || || || || || || || ||| | ||||| ||||| || || | | Sbjct 30 CCATGCAGATTTTCGTCAAGACCCTCACGGGTAAGACAATTACCCTTGAGGTCGAGTCCT 89 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||| | || |||| ||||| || || ||||||||||| || || || ||||| | Sbjct 90 CTGACACTATCGAGAGTGTCAAGACCAAGATCCAAGACAAAGAGGGAATCCCTCCCGACC 149 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 |||||||| | || | ||| || || || | || || | || |||| || |||| Sbjct 150 AACAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGACGTACTCTTTCTGACTACA 209 Query 27166 ACATTCAAAAGGAGTCGACC 27185 |||| ||||||||||| ||| Sbjct 210 ACATCCAAAAGGAGTCCACC 229 >seq6776 Length=2740 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| || || || || |||||||||||| | || | || || ||||| ||| Sbjct 1211 CCATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGA 1270 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 |||| |||| |||| || || || || || ||||| || ||||| || || || | Sbjct 1271 GCGACACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACC 1330 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||||| | || | ||||||||| || |||| || | || | || || |||| Sbjct 1331 AGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTACA 1390 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 |||| || |||||||| || | || |||| |||| |||| || ||| Sbjct 1391 ACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGC 1440 >seq2782 Length=10868 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || |||||| | || || || || ||||| || Sbjct 9991 CATGCAGATCTTCGTGAAGACACTCACTGGCAAGACCATCACCCTCGAGGTGGAGAGCTC 9932 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || ||| || || || || || ||||| ||||| || || || || || Sbjct 9931 AGACACCATCGAGTCCGTGAAGACCAAGATCCAGGACAAGGAAGGAATTCCCCCTGACCA 9872 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| ||| | || | |||||||| ||| | || || | ||| | || |||||||| Sbjct 9871 ACAACGTCTTATCTTTGCCGGCAAGCAACTAGAGGATGGACGTACCCTCTCTGATTACAA 9812 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| ||| | || ||||| | ||| | || |||||||| Sbjct 9811 CATCCAGAAGGAGTCCACCCTTCACTTGGTGCTCCGTCTACGTGGTGGCAT 9761 >seq30454 Length=461 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26989 TGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCG 27048 || |||| || || || || || || || ||| ||||||| ||||| || || || | Sbjct 239 TGTAGATCTTCGTCAAGACCCTCACTGGTAAGACTATTACCCTTGAGGTTGAGAGCTCTG 180 Query 27049 ACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAAC 27108 || | || ||| || || || ||||| ||||| ||||| || || || || |||| Sbjct 179 ACACTATCGAGTCAGTAAAGACCAAGATTCAGGACAAGGAAGGAATTCCCCCTGACCAAC 120 Query 27109 AGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACA 27168 | ||||| || | || ||||| || | || || | ||| | ||||| ||||| | Sbjct 119 AACGTTTGATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTCTCCGACTACAATA 60 Query 27169 TTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||||| ||| | || ||||| | || | || ||||| || Sbjct 59 TTCAAAAGGAGTCCACCCTTCACTTGGTGCTCCGCCTCCGTGGTGGAAT 11 >seq22 Length=338851 Score = 95.1 bits (104), Expect = 1e-14 Identities = 156/224 (70%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || ||||| ||| | || || | || || || || Sbjct 331529 ATGCAAATCTTCGTCAAGACCCTCACCGGAAAGACCATCACCTTGGAGGTCGAGAGCTCT 331470 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || || ||| || |||||||| ||||| || || || || ||| Sbjct 331469 GATACCATCGAGAGCGTGAAGACAAAGATCCAAGACAAGGAAGGAATCCCCCCTGACCAA 331410 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || | || | |||||| || ||| | || || | ||| | ||||| ||||| Sbjct 331409 CAACGCCTTATCTTCGCCGGAAAGCAACTCGAGGATGGACGCACCCTCTCCGACTACAAT 331350 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT--TTTGCGTTTGCGG 27209 |||||||||||||| ||||| || ||||| || || || |||| Sbjct 331349 ATTCAAAAGGAGTCCACCTTGCACTTGGTGCTTCGCCTTCGCGG 331306 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 26992 AGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACT 27051 |||| || || || ||||| || || ||| | |||||| | || || || || ||| Sbjct 332424 AGATTTTCGTGAAGACTCTCACAGGAAAGACCATTACTTTGGAGGTCGAGAGCTCTGACA 332365 Query 27052 CGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGC 27111 | || |||| ||||| || || || ||||| || || || || || || ||||| | Sbjct 332364 CTATCGAGAGTGTCAAGACTAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCAACAAC 332305 Query 27112 GTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTC 27171 || | || | ||| ||||| ||| | || || | |||| |||| || |||||||||| Sbjct 332304 GTCTCATTTTCGCTGGCAAGCAACTCGAGGATGGAAGGACCCTTTCTGACTACAACATTC 332245 Query 27172 AAAAGGAGTCGACC 27185 | |||||||| ||| Sbjct 332244 AGAAGGAGTCCACC 332231 Score = 87.8 bits (96), Expect = 2e-12 Identities = 164/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 26977 ATTTATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAG 27036 ||||||| | || |||| || || || || ||||||| ||| | || ||| | || | Sbjct 331768 ATTTATATTCTTTGTAGATTTTCGTCAAGACCTTGACCGGAAAGACCATCACTTTAGAGG 331709 Query 27037 TGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATAC 27096 | || || || | || |||| || || || || |||||||| || ||||| | Sbjct 331708 TCGAGAGCTCTGATACCATCGAGAGCGTGAAGACCAAGATCCAAGACAAGGAGGGCATCC 331649 Query 27097 CACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTT 27156 | ||||| ||||||||||| || | ||||| || || | || || | ||| | Sbjct 331648 CCCCCGACCAACAGCGTTTGATCTTTGCCGGAAAGCAGCTTGAGGATGGACGCACCTTGA 331589 Query 27157 CCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 ||| |||||||| || |||||||| ||| | || ||||| | || | || ||||| | Sbjct 331588 GCGACTACAACATCCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGCCTCCGTGGTGGAA 331529 Query 27217 T 27217 | Sbjct 331528 T 331528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434539548018240