Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_028896.1 Length=32675 Score E Sequences producing significant alignments: (Bits) Value seq2320 172 1e-38 >seq2320 Length=11620 Score = 172 bits (190), Expect = 1e-38 Identities = 819/1286 (64%), Gaps = 69/1286 (5%) Strand=Plus/Minus Query 19805 TTCGAATATCAGTTGCACTGGTATCGCGCCGGGCTTGAGCACCGCATCCGCGATATCCTG 19864 ||||| ||||| | ||||||||| |||| | ||| ||| ||| | || || Sbjct 9615 TTCGACTATCAAAAGGTCTGGTATCGGCAAGGGCATCAGC---GCACGCGCAACATTCTC 9559 Query 19865 AAATCCCGCCAGATTGGCGCGACGTTTTATTTTTCCCGCGAGGCGCTGCTGCGCGCCCTG 19924 || || || ||||| |||||||||| ||||| | || ||||| ||| ||| | Sbjct 9558 AAGTCGCGGCAGATCGGCGCGACGTGGTATTTCGCACGAGAGGCACTGGACGACGCGATC 9499 Query 19925 AAAACCGGTCATAACCAGATTTTTCTGTCGGCCAGTAAAACGCAGGCGTATGTGTTC-CG 19983 | ||||| | | |||||||||||||||||||| || | || ||| | || ||| || Sbjct 9498 ACGACCGGCCGCGATCAGATTTTTCTGTCGGCCAGCAAGGCACACGCGCACGTTTTCACG 9439 Query 19984 CGAATACATCATCGCC--TTTGCCCGGCTGGTTGACGTTGAC---CTGACCGGTGACCCG 20038 | | ||||| | ||| ||||| || || | || || | || || || |||||| Sbjct 9438 C-AGTACAT--TTGCCAGTTTGCGCGCGAGGCCGCCGATGTCGAGCTAACAGGCGACCCG 9382 Query 20039 ATTGTCCTGGGCAATAACGGCGCAAAACTGATTTTTCTCGGCACCAACTCCAACACCGCA 20098 || || || ||| | |||| | | ||||| ||||| ||| | ||||||| Sbjct 9381 ATCATCTTGCCGAATGA-GGCG--ACGTTACGCTTTCTAGGCACGAACGCGCGCACCGCA 9325 Query 20099 CAGAGCCATAACGGCGACCTGTACGTCGACGAGATTTTCTGGA-TCCCGAATTTTCAGGT 20157 |||||| || ||||| | | || ||||||| || |||| | || |||| | | Sbjct 9324 CAGAGCTATCACGGCAATTTCTATTTCGACGAATACTTTTGGACTGGCGGATTT-CGCGA 9266 Query 20158 ACTGCGTAAGGTGGCATCAGGTATGGCCTCACAGAGTCACCTGC-GCTCGACCTATTTCT 20216 ||| |||||| || || || ||||| || | | || | |||||||||| Sbjct 9265 GCTGAATAAGGTCGCGTCGGGCATGGCGATGCACAAAAAAATGGAGAAAAACCTATTTCT 9206 Query 20217 CCACCCCGTCCACGCTGGCGCACGACGCCTACCCGTTCTGGTCGGGTGAACTGTTCAACC 20276 |||| ||||| | | | || | |||||| | |||||| || || | ||||||| Sbjct 9205 CCACGCCGTCGAGCATTGGACATGCCGCCTATACCTTCTGGAGTGGCGAGCACTTCAACC 9146 Query 20277 GGGGACGCGCCAGCGCCGCCGAACGCGTGGAAATCGACGTCAGTCATAACGCCCTTGCCG 20336 | || ||||| | | || | | || | | ||||| | | || || || |||| Sbjct 9145 GAGGCCGCGCAAAGGTCGATCATC---TGCATCTGGACGTAACGCGCAAGGCGCTCGCCG 9089 Query 20337 GAGGTCTTCTCTGTGCGGACGGCCAGTGGCGGCAGATTGTCACCATTGAGGACGCCCTGA 20396 | || | |||||| | ||| | || ||||| ||||| || ||| | ||||| ||| | Sbjct 9088 GCGGCCGTCTCTGCGAGGATAGGCAATGGCGCCAGATCGTGACCGTCGAGGATGCCGTCG 9029 Query 20397 AAGGCGGCTGCACGCTGTTCGACATTGAGCAGCTCAAACGTGAAAACAGCGCCGACGATT 20456 ||||| ||| |||||||| || | |||| | |||| ||||||| | || | Sbjct 9028 CCGGCGGGTGCGACCTGTTCGATATCGGCGAGCTACGTCTTGAATACAGCGCGCAGGAAT 8969 Query 20457 TTAAAAACCTGTTCATGTGTGAATTTGTTGACGACAAGGCGTCGGTGTTCCCGTTCGAGG 20516 || ||||| ||||| | ||| | ||||| | |||||| | |||||| ||| || Sbjct 8968 ACGCCAATCTGTTGATGTGCCAGTTTATCGACGATACAGCGTCGATTTTCCCGCTCGCGG 8909 Query 20517 AGCTGCAACGTTGCATGGTCGACACGCTGGAAGAATGGGAAGACTATGCGCCGTTTGCCG 20576 | | || |||||||||||||| ||||| Sbjct 8908 ATTTACAGCGTTGCATGGTCGA--------------------------------TTGCCC 8881 Query 20577 CAAATCCGTTCGGCTCCCGCCCGGTATGGATTGGTTACGACCCGTCAC-ACCGTGGCGAC 20635 | || ||||||| |||||| | ||| | || || ||||| | | | || || ||| Sbjct 8880 C--GCCCTTTCGGCTATCGCCCGCTGTGGGTCGGCTATGACCCAGCGCTATCG-GGTGAC 8824 Query 20636 AGCGCCGGAT---GCGTGGTACTGGCACCGCCGGTGGTGGCCGGTGGCAAATTCAGAATA 20692 ||||| | |||| | | |||||||||| |||| | || ||||| || | | Sbjct 8823 TCGGCCGGCTTGAGCGTCG---TCGCACCGCCGGCGGTGCCTGGGGGCAAGTTTCGCGTG 8767 Query 20693 CTTGAGCGTCACCAGTGGAAAGGCATGGACTTTGCCACCCAGGCGGAATCCATCCGCAAA 20752 || | ||| ||| |||||||| || | | ||||| || | || ||| Sbjct 8766 CTGCACAAGTGCCAATGGCGCGGCATGGATTTCGAGGCACAGGCCGAGGCGATACGCGCG 8707 Query 20753 CTCACCGAAAAATATAACGTTGAATACATCGGGATTGATGCCACCGGCCTCGGTGTCGGC 20812 |||| | |||| ||||| | || || | ||| ||| | || ||| |||| ||| Sbjct 8706 ATCACGCAGCAATACAACGTCGCCTATATGGCGATCGATACGACAGGCATCGGCCAGGGC 8647 Query 20813 GTGTTCCAGCTCGTGCGCTCGTTCTATCCCGCCGCGCGCGATATCCGCTACACGCCGGAA 20872 || | |||||||| | ||||||||| |||| || || ||| |||| ||| Sbjct 8646 GTCTATCAGCTCGTCAGGCAGTTCTATCCGAACGCGGTCGCGCTCAACTATTCGCCAGAA 8587 Query 20873 ATGAA-AACCGCAATGGTGCTC-AAGGCAAAAGAC-GTTATCCGCCGTGGCTGTCTGGAA 20929 | || |||| |||||||| ||||| | | || ||| | ||| | || ||| Sbjct 8586 GTTAAGGGCCGC-CTGGTGCTCAAAGGC--TTGTCGGTGATCGGTAAGGGCCGGCTCGAA 8530 Query 20930 TATGACGTCAGCGCCACCGACATCACCAGCTCGTTTATGGCTATCCGCAAGACCATGACC 20989 | || | | | || ||| | | ||||| ||||| || ||||| |||||||| Sbjct 8529 TTCGATGCCGGATGGACAGACTTAGCGCAATCGTTCATGGCGATTCGCAAAACCATGACG 8470 Query 20990 AGCAGCGGACGCAGCGCCACCTATGAGGCCAGCCGCAGCGAGGAAGCCAGCCACGCCGAT 21049 |||||| | | ||| ||||| || ||||| | |||| || | | ||||| || Sbjct 8469 GCGAGCGGAAAGAAAGTCACTTATGAAGCGAGCCGTAACGAGCAAACAGGACACGCGGAC 8410 Query 21050 CTCGCCTGGGCGACTATGCACGCCCT 21075 || ||||||||| ||||||| || Sbjct 8409 CTTGCCTGGGCGTGCCTGCACGCGCT 8384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104351973764478