Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_028931.1 Length=55108 Score E Sequences producing significant alignments: (Bits) Value seq4028 91.5 5e-14 >seq4028 Length=6092 Score = 91.5 bits (100), Expect = 5e-14 Identities = 455/709 (64%), Gaps = 47/709 (7%) Strand=Plus/Minus Query 4338 CGAGCTGTGGGACGCTGTCATGCGCTCCACCTGGGACTGGGCCGAGCCGGGCGTCCTGTT 4397 || ||||||||| || ||||||| || |||| ||| ||||||||||||||| |||| Sbjct 3157 CGCGCTGTGGGATGCGATCATGCGTTCGACCTACGACGTGGCCGAGCCGGGCGTGGTGTT 3098 Query 4398 CATCGACACCATCAACCGCATGAACAATCTCTG-GTACTGCGAGGAGATTGCGGCCACCA 4456 |||| ||| ||| ||||| || | | || ||| || || |||| Sbjct 3097 CATCTCGCGCATGAACGAGGACAACAACCTGCGCGCGCT-CGAATCCATCCGCGCGACCA 3039 Query 4457 ACCCGTGCGGCGAGCAGCCGCTGCCTCCGTTCGGCGCCTGCCTGCTTGGCTCCTTCAACC 4516 ||||||||||||||||||| ||||| | | ||| |||| || || | | ||| Sbjct 3038 ACCCGTGCGGCGAGCAGCCTCTGCCCGCCTACGGTTGCTGCAACCTCGGACCGCTTGACC 2979 Query 4517 TGGTGCGCTATCTG-------CGG-CGCG-ACATGGTTGGCTG------GTCCTTCGACT 4561 | ||||| || || |||| | ||| ||| | | ||||||| Sbjct 2978 TCACGCGCTTCGTGATCGACCCGTTCGCGCAAATGCGCGGCGGCAAGGCGGATTTCGACT 2919 Query 4562 GGTGCCAGCTCGCCGAGGACATCCCGGTCGTC---GTGCGCGCCATGGACAACGTGGTCG 4618 || || |||||||| || ||| | | || ||| | ||| ||||| ||| Sbjct 2918 GGAATCAACTCGCCGAACGCA---CGGGCACCCAGGTACGCTTTCTCGACGACGTGCTCG 2862 Query 4619 ACCGGGCCCGCTACCCGTTGCCGCAGCAGGAGCAGGAGGCGAGGTCCAAACGCCGGATGG 4678 || | | || ||| |||| ||||| || ||||||| | |||| || || || | Sbjct 2861 ACGCCACGCTCTGGCCGCTGCCCGAGCAGCAGGCGGAGGCGGCGGCCAAGCGGCGTATCG 2802 Query 4679 GCCTGGGTGTGACCGCCCT-GGCGA-ACGCGGGCGAGGCCCTGGGCCACCCCTACGGCTC 4736 || |||| | || | || ||||| |||| | || || | ||| || |||| ||| Sbjct 2801 GCGTGGGCTTCACGGGACTCGGCGACACGCTCGTGATGCTC--GGCATCCGCTACAACTC 2744 Query 4737 GCCCG---GCTTCCTGGACTTCACCCGCCGCGTGCTGACGATGGTGCGCGACGAGTCCTA 4793 ||||| ||| | || ||| | |||||| | | | ||||||||| |||| Sbjct 2743 GCCCGAAGGCTGC---GAATTCGGCGCGCGCGTGGGGCGCACGATGCGCGACGCCGCCTA 2687 Query 4794 CCGCGCGTCGGCCCTGTTGGCCCATGAGAAGGGCTCCTTCCCGCTCTTCGAGGCCGAGCA 4853 ||||| || | | | || | ||| ||| | || |||||||||| || ||| | Sbjct 2686 TCGCGCCTCCGTCGAACTCGCGCGCGAGCGCGGCGCTTTTGCGCTCTTCGACGC-GAGGA 2628 Query 4854 G-TACCTGGAGTCCG---CCTTCGTGAAGACCCTGCCCGAGGACGTCCGCGAGATGATCG 4909 ||||| || | |||| | | ||||||||| ||| || | |||| Sbjct 2627 CATACCTCGAAGAAGGCACCTTTGCCTCGCGCCTGCCCGACGACCTCAAGGCCGAGATCC 2568 Query 4910 CCGAGCTGGGCATCCGCAACTCCCACCTGACCTCCATCGCGCCGACCGGCACCATCAGCC 4969 || || |||||||||||| ||| ||| ||||||||||| || ||||| | |||| Sbjct 2567 GCGCGCACGGCATCCGCAACAGCCATCTGCTTTCCATCGCGCCCACGGGCACGGTGAGCC 2508 Query 4970 T---GTGCGCCGACAACGTGAGCTC---CGGCCTGGAGCCCGTGTTCTC 5012 | || |||||||||||| ||| |||| | ||||||| |||||| Sbjct 2507 TCGCGTTCGCCGACAACGT---CTCGAACGGCATCGAGCCCGCGTTCTC 2462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 176078168802580