Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_028943.1 Length=29237 Score E Sequences producing significant alignments: (Bits) Value seq2320 170 4e-38 >seq2320 Length=11620 Score = 170 bits (188), Expect = 4e-38 Identities = 1040/1646 (63%), Gaps = 101/1646 (6%) Strand=Plus/Plus Query 8075 AGCCACGGGTGCGGAATAAACGTTGAAGCCAGAATATTACGTTTGACGTAAATCGGTGAG 8134 ||| || ||||||||| ||||| | | || | |||||||||| ||| |||| ||| Sbjct 8040 AGCAACCTGTGCGGAATGAACGTCGCCGATAGCACGTTACGTTTGAAGTAGATCGCCGAG 8099 Query 8135 CTGTGATGTACGGCAGCACGCAGGCTTTTTGCCAGACCGGTAAAGCTGACCGGTGGCTCA 8194 | |||||| ||| | || || | |||| ||||| || | | ||||| ||||| Sbjct 8100 CCGTGATGGACGCCGGCGCGGAATGTTTTAGCCAGGCCCGACCACGACACCGGCGGCTCG 8159 Query 8195 TACCATCTGCCGTTACTGATGCAC---TCGACGTAATCCAGAATGTCACGGCGGTCGAGT 8251 |||| ||||| | || ||| |||||||| || ||||| || |||||| | | Sbjct 8160 AACCAGTTGCCGG--CCGAC-CACGTTTCGACGTAGTCAAGAATCTCGGCGCGGTCCATT 8216 Query 8252 ACCGGCACCGGTTCACCAAAGGTGAATGCCTCCATTTTCGG-GGCGCTGGCGGT------ 8304 || ||||||| || || |||||||| ||||| |||| |||| | ||| Sbjct 8217 ACTGGCACCGCGTCGCCGAAGGTGAAGGCCTCGGCCCTCGGCGGCGTCGACGGGGCGGCC 8276 Query 8305 -CAttttttt-tGCCGCAGGTTGCGGTGTTTTCCCTTTTTTCTTGCTCATCAGTAAAACT 8362 || | ||| | ||| |||| || | || |||||||| | |||| Sbjct 8277 GCAGTCGACAGTGCGGGCGGT-GCGGCGTG--CATGTTGCGCTTGCTCAATTTGAGAACT 8333 Query 8363 CCAGAATGGTGGA--TGTCAGCGGGGTGCTGATACCGGCGGTGAGTGGCTCATTTAACAG 8420 ||| || | || ||| |||| ||| || | | || || || || Sbjct 8334 CCATAAAGCCGGTATTGTTGGCGG-----TGACGCCTTCT---AACGGTTCGTTGCCGAG 8385 Query 8421 GGCGTGCATGGTCGCCCAGGCGAGGTCGGCGTGGCTGGCTTCCTCGCTGCGGCTGGCCTC 8480 ||||||| | ||||||||| ||||| ||||| | | || |||| | ||||| || || Sbjct 8386 CGCGTGCAGGCACGCCCAGGCAAGGTCCGCGTGTCCTGTTTGCTCGTTACGGCTCGCTTC 8445 Query 8481 ATAGGTGGCGCTGCGTCCGCTGCTGGTCATGGTCTTGCGGATAGCCATAAACGAGCTGGT 8540 ||| ||| | | |||||| |||||||| ||||| || ||||| ||||| | Sbjct 8446 ATAAGTGACTTTCTTTCCGCTCGCCGTCATGGTTTTGCGAATCGCCATGAACGATTGCGC 8505 Query 8541 GATGTCGGTGGCGCTGACGTCATATTCCAGACAGCC---ACGGCGAATAACGTCTTTTGC 8597 | ||| || | | | || |||| || | ||| || ||| | || | || Sbjct 8506 TAAGTCTGTCCATCCGGCATCGAATTCGAGCCGGCCCTTAC--CGATCACCGACAA--GC 8561 Query 8598 CTT-GAGCACCATTGCGGTT-TTCATTTCCGGCGTGTAGCGGATATCGCGTGCGGCGGGA 8655 ||| |||||||| |||| || | ||| |||| ||| || || ||| ||| Sbjct 8562 CTTTGAGCACCAG-GCGGCCCTTAACTTCTGGCGAATAGTTGAGCGCGACCGCGTTCGGA 8620 Query 8656 TAGAACGAGCGAACGAGCTGGAACACGCCGACACCGAGGCCGGTGGCATCAATTCCGATG 8715 |||||| | |||||||| | ||||| |||| ||| || | ||| || | || Sbjct 8621 TAGAACTGCCTGACGAGCTGATAGACGCCCTGGCCGATGCCTGTCGTATCGATCGCCATA 8680 Query 8716 TATTCGACGTTGTATTTTTCGGTGAGTTTGCGGATGGATTCAGCCTGGGTGGCAAAGTCC 8775 || |||||||||||| | |||| ||| || | || ||||| | | || ||| Sbjct 8681 TAGGCGACGTTGTATTGCTGCGTGATCGCGCGTATCGCCTCGGCCTGTGCCTCGAAATCC 8740 Query 8776 ATGCCTTTCCACTGGTGACGCTCAAGTATTCTGAATTTGCCACCGGCCACCACCGGCGGT 8835 ||||| ||| ||| | || | | || ||||| || | |||| |||||||| Sbjct 8741 ATGCCGCGCCATTGGCACTTGTGCAGCACGCGAAACTTGCCCCCAGGCACCGCCGGCGGT 8800 Query 8836 GCCAGCACCACGC---ATCCGGCACTGTCGCCACGGT-GTGACGGGTCGTAACCAATCCA 8891 || | | |||| | ||||| ||| || || | | | ||||| || || | ||| Sbjct 8801 GCGA---CGACGCTCAAGCCGGCCGAGTCACC-CGATAGCGCTGGGTCATAGCCGACCCA 8856 Query 8892 GACCGGGCGGGAGCCGAACGGATTCGCGGCAAACGGCGCATAGTCTTCCCATTCTTCCAG 8951 | |||||| ||||||| || || ||||| Sbjct 8857 CAGCGGGCGATAGCCGAAAGGG--CGGGGCAA---------------------------- 8886 Query 8952 CGTGTCGACCATGCAGCGTTGCAGCTCCTCGAACGGGAACACCGACGCCTTGTCGTCAAC 9011 ||||||||||| || || | ||| ||| |||||| | |||||| | ||||| | Sbjct 8887 ----TCGACCATGCAACGCTGTAAATCCGCGAGCGGGAAAATCGACGCTGTATCGTCGAT 8942 Query 9012 AAATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGTTTAAGCTGCTC 9071 ||| | ||||| ||||| || | || | ||||||| ||| | |||| | Sbjct 8943 AAACTGGCACATCAACAGATTGGCGTATTCCTGCGCGCTGTATTCAAGACGTAGCTCGCC 9002 Query 9072 AATGTCGAACAGCGTGCAGCCACCTTTCAGGGCGTCCTCAATGGTGACAATCTGCCGCCA 9131 || |||||||| ||| || || | ||| ||||| | ||| || ||||| ||||| Sbjct 9003 GATATCGAACAGGTCGCACCCGCCGGCGACGGCATCCTCGACGGTCACGATCTGGCGCCA 9062 Query 9132 CTGACCGTCCGCACAGAGAAGCCCACCGGCAAGAGCGTTATGACTGACGTCGATTTCCAC 9191 || | ||| | |||||| | || ||||| || || || | | ||||| | | || Sbjct 9063 TTGCCTATCCTCGCAGAGACGGCCGCCGGCGAGCGCCTTGCGCGTTACGTCCAGATGCA- 9121 Query 9192 GCGTTCGGCGGCGCTGGCGCGTCCCCGGTTGAACAGTTCACCCGACCAGAACGGGTAGGC 9251 | | || | | ||||| || |||||||| | || || |||||| | ||||| Sbjct 9122 --GATGATCGACCTTTGCGCGGCCTCGGTTGAAGTGCTCGCCACTCCAGAAGGTATAGGC 9179 Query 9252 GTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTCGAGC-GCAGGTGACTCTGTGAGG 9310 | | || | | | ||||| |||||||||||||| | || | | || | Sbjct 9180 GGCATGTCCAATGCTCGACGGCGTGGAGAAATAGGTTTTTCTCCATTTTTTTGTGCATCG 9239 Query 9311 CCATACCTGATGCCACCTTACGCAGTACCTGAAAATTCGGTA-TCCAGAAAATCTCGTCG 9369 |||| || || || |||||| ||| | | |||| || | |||| || |||||| Sbjct 9240 CCATGCCCGACGCGACCTTATTCAGCTCGCG-AAATCCGCCAGTCCAAAAGTATTCGTCG 9298 Query 9370 ACGTACAGGTCGCCGTTATGGCTCTGCGCGGTGTTGGAGTTGGTGCCGAGAAAAATCAGT 9429 | || | | ||||| || |||||| |||||| | ||| ||||| ||||| | Sbjct 9299 AAATAGAAATTGCCGTGATAGCTCTGTGCGGTGCGCGCGTTCGTGCCTAGAAAGCGTAAC 9358 Query 9430 TTTGCGCCGTTATTGCCCAGGACAATCGGGTCACCGGTCAG---GTCAACGTCAACCAGC 9486 | |||| | ||| || || |||||||| || || || | || || | || Sbjct 9359 GT--CGCC-TCATTCGGCAAGATGATCGGGTCGCCTGTTAGCTCGACATCGGCGGCCTCG 9415 Query 9487 CGGGCAAA--GGCGATGATGTATTCGCG-GAACACATACGCCTGCGTTTTACTGGCCGAC 9543 || ||||| ||| | ||||| | ||| ||| || | ||| || | || ||||||||| Sbjct 9416 CGCGCAAACTGGCAA--ATGTACT-GCGTGAAAACGTGCGCGTGTGCCTTGCTGGCCGAC 9472 Query 9544 AGAAAAATCTGGTTATGACCGGTTTTCAGGGCGCGCAGCAGCGCCTCGCGGGAAAAATAA 9603 ||||||||||| | | ||||| | | ||| ||| ||||| || | ||||| Sbjct 9473 AGAAAAATCTGATCGCGGCCGGTCGTGATCGCGTCGTCCAGTGCCTCTCGTGCGAAATAC 9532 Query 9604 AACGTCGCGCCAATCTGGCGGGATTTCAGGATATCGCGGATGCGGTGCTCAAGCCCGGCG 9663 |||||||||| ||||| || || || || || | ||| ||| ||| | |||| Sbjct 9533 CACGTCGCGCCGATCTGCCGCGACTTGAGAATGTTGCGCGTGC---GCTGATGCCCTTGC 9589 Query 9664 CGATACCAGTGCAACTGATATTCGAA 9689 ||||||||| | ||||| ||||| Sbjct 9590 CGATACCAGACCTTTTGATAGTCGAA 9615 Score = 158 bits (174), Expect = 2e-34 Identities = 284/408 (70%), Gaps = 8/408 (2%) Strand=Plus/Plus Query 7487 CCCATCAACTGAAAGGGGATGCGGTGCGCGTCCAGCAGGTCAGCGGCGC-TGGCTTTTTT 7545 ||||| | ||| ||||||||| ||||| | |||| ||| || ||| || | || || Sbjct 7452 CCCATGAGCTGCGGGGGGATGCGATGCGCCGCGAGCAAGTCGTCG-CGCGTGACATTCTT 7510 Query 7546 GATATTaaaaaaaTCGTCCTTCGTTGCCACTTCACTGAGCGGGATAATTTTAATGCCGTC 7605 |||||| ||||| ||||| |||| | || || | || || | | || ||||| Sbjct 7511 GATATTGAAAAACTCGTCTTTCGCCGTGACCTCGGAAACGGGAATGAGCTGGATACCGTC 7570 Query 7606 GGCTTTCCCCTGCGGGGCATAGAGAAACAGATTTTTAAAGTTGT-TGCGGCCTTTCGACT 7664 || || | ||| || || | ||||| ||| || ||| || |||| | | Sbjct 7571 TTTCTTGCCGTTCGGCGCGTACATGAACAGGTTTCGGAAATTGCCTGGCCCCTTGCTGTT 7630 Query 7665 TGACCATGTTTTCGCGAAGCATTTCGATATCG--TTGCGATCCTGCACGGCATCGGTGAC 7722 | | | | | |||| | | |||| |||| |||||| |||| | ||||| || | Sbjct 7631 TTTCAACGCCT-CGCGCATGTTGTCGACATCGGTTTGCGA--CTGCGCCGCATCCGTCAT 7687 Query 7723 GTACATGATATATCCGGCATGAGCGCCGTTTTCGTAATACTTGCGGCGGAACAGCGTGGC 7782 ||||| |||| | || || || | || || ||||||||| ||||| || ||||| || Sbjct 7688 GTACAGGATAAAGCCCGCGTGCGAACCATTCTCGTAATACCGCCGGCGAAATAGCGTCGC 7747 Query 7783 CGACTCATTCAGCCAGGCAGAATTAAGGGCGCTGAGATATTCCGGCAGGCCGTACAGCTC 7842 |||||| |||| ||| || | | ||||||| ||||||||| |||| ||| |||| ||| Sbjct 7748 CGACTCGTTCAACCATGCCGCGTGCAGGGCGCCGAGATATTCGGGCAAGCCATACACCTC 7807 Query 7843 CTGATTAATATCCGGCTCCAGCAGGTGAAACACGGAGCCGGGCGCGAA 7890 ||||||||| ||||| |||| || |||| ||||| |||| |||||| Sbjct 7808 CTGATTAATGTCCGGTTCCATCAAGTGATGCACGGTCCCGGCCGCGAA 7855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 93359477952906