Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_029003.2 Length=29733 Score E Sequences producing significant alignments: (Bits) Value seq2320 282 8e-72 >seq2320 Length=11620 Score = 282 bits (312), Expect = 8e-72 Identities = 816/1247 (65%), Gaps = 58/1247 (5%) Strand=Plus/Plus Query 1294 CGGTTCGTTTAACAGGGCGTGCATGGTGGCCCATGCGATATCAGCGTGGCTGGCTTCCTC 1353 ||||||||| || ||||||| | ||||| || | || ||||| | | || ||| Sbjct 8371 CGGTTCGTTGCCGAGCGCGTGCAGGCACGCCCAGGCAAGGTCCGCGTGTCCTGTTTGCTC 8430 Query 1354 GGTGCGACTGGCCTCATAGGTGGCGCTGCGCCCGCTGCTGGTCATGGTTTTGCGGATGGA 1413 | | || || || ||||| ||| | | ||||| |||||||||||||| || | Sbjct 8431 GTTACGGCTCGCTTCATAAGTGACTTTCTTTCCGCTCGCCGTCATGGTTTTGCGAATCGC 8490 Query 1414 CATAAACGACTGTGTGACATCAGTTGCTCCGGCGTCGTACTCCAGACAGCCACGGCGAAT 1473 ||| ||||| || | | || || |||||| ||| | || || | ||| | || Sbjct 8491 CATGAACGATTGCGCTAAGTCTGTCCATCCGGCATCGAATTCGAGCCGGCCCTTACCGAT 8550 Query 1474 CGT-GTCTTTCGCCTTGAGCACCATTGCGGTT-TTCATTTCTGGCGTGTAACGGATACCG 1531 | | | | | |||||||||| |||| || | |||||||| || || || Sbjct 8551 CACCGACAAGC-CTTTGAGCACCAG-GCGGCCCTTAACTTCTGGCGAATAGTTGAG--CG 8606 Query 1532 CGTGCCGC---CGGGTAGAATGAGCGCACCAACTGGAATACACCGAGACCGAGGCCTGTT 1588 || |||| ||| ||||| | || | ||| | || || | |||| |||||| Sbjct 8607 CGA-CCGCGTTCGGATAGAACTGCCTGACGAGCTGATAGACGCCCTGGCCGATGCCTGTC 8665 Query 1589 GCGTCAATGCCGATGTATTCGACGTTGTATTTCTCAGTGAGCCTGCGGATGGCTTCTGCC 1648 | || || | || || |||||||||||| || |||| | ||| || || || ||| Sbjct 8666 GTATCGATCGCCATATAGGCGACGTTGTATTGCTGCGTGATCGCGCGTATCGCCTCGGCC 8725 Query 1649 TGCGCGGCAAAGTCCATGCCTTTCCACTGGTGACGCTCCAGCATGCGAAACTTGCCACCC 1708 || || | || |||||||| ||| ||| | ||||| |||||||||||| || Sbjct 8726 TGTGCCTCGAAATCCATGCCGCGCCATTGGCACTTGTGCAGCACGCGAAACTTGCCCCCA 8785 Query 1709 GAAACCACCGGCGGCGCGAGTACGACACATCCGGCACTGTCGCCGGTGTGGGACGGGTCG 1768 | ||| ||||||| |||| ||| | ||||| ||| || | | | ||||| Sbjct 8786 GGCACCGCCGGCGGTGCGACGACGCTCAAGCCGGCCGAGTCACCCGATAGCGCTGGGTCA 8845 Query 1769 TAGCCAATCCAGACCGGGCGCGAGCCGAATGGATGGTCGGCGAACGGGGCGAAGTCCTCC 1828 ||||| | ||| | |||||| ||||||| || |||||| | Sbjct 8846 TAGCCGACCCACAGCGGGCGATAGCCGAAAGGG-----------CGGGGCAA-------- 8886 Query 1829 CATGTTTCCATCACGTCGACCATGCAGCGCTGCAGCTCCTCGAACGGGAATACCGATGCC 1888 ||||||||||| ||||| | ||| ||| |||||| | ||| || Sbjct 8887 ---------------TCGACCATGCAACGCTGTAAATCCGCGAGCGGGAAAATCGACGCT 8931 Query 1889 TTATCGTCGACAAACTCGCACATAAACAGGTTCTTAAAGTCCTCATCACTGTTTTCGCGT 1948 ||||||||| ||||| |||||| ||||| || | |||| | |||| ||| | Sbjct 8932 GTATCGTCGATAAACTGGCACATCAACAGATTGGCGTATTCCTGCGCGCTGTATTCAAGA 8991 Query 1949 CTGAGCTGGTCGAGGTCGAACAGGGTGCAGCCACCGGCAAGGGCGTCCTCAATAGTGACA 2008 | |||| | ||| ||||||||| ||| || ||||| | ||| ||||| | || || Sbjct 8992 CGTAGCTCGCCGATATCGAACAGGTCGCACCCGCCGGCGACGGCATCCTCGACGGTCACG 9051 Query 2009 ATCTGCCGCCACTGTCCGTCAGCGCAAAGAAGCCCACCGGCGAGCGCGCTGTGACTGATG 2068 ||||| ||||| || | || |||| ||| | || ||||||||||| || | | | | Sbjct 9052 ATCTGGCGCCATTGCCTATCCTCGCAGAGACGGCCGCCGGCGAGCGCCTTGCGCGTTACG 9111 Query 2069 TCGATTTCGATGC-GGTCAGCGGCACTGGCGCGCCCCTTGTTGAACAGCTCGCCAGACCA 2127 || | ||||| | | | || | | ||||| || |||||| |||||||| ||| Sbjct 9112 TCCA----GATGCAGATGATCGACCTTTGCGCGGCCTCGGTTGAAGTGCTCGCCACTCCA 9167 Query 2128 GAAGGGGTAAGCGCCGTGCGCCAGCGTGGAAGGTGTCGAAAAGTAAGTTGAGC-GCAGAT 2186 ||||| || ||| | || | | | || || || || || || ||| | || | Sbjct 9168 GAAGGTATAGGCGGCATGTCCAATGCTCGACGGCGTGGAGAAATAGGTTTTTCTCCATTT 9227 Query 2187 GCTTTTGCGAGGCCATGCCCGATGCGACTTTGCGCAGCTTCTGAAAATTCGGGA-TCCAG 2245 || ||| ||||||||||| ||||| || |||| || |||| || | |||| Sbjct 9228 TTTTGTGCATCGCCATGCCCGACGCGACCTTATTCAGC-TCGCGAAATCCGCCAGTCCAA 9286 Query 2246 AATATTTCATCGACATACAGGTCGCCGTTATGGCTCTGTGCGGTGTTGGAATTGGTGCCG 2305 || ||| |||| ||| | | ||||| || ||||||||||||| | || ||||| Sbjct 9287 AAGTATTCGTCGAAATAGAAATTGCCGTGATAGCTCTGTGCGGTGCGCGCGTTCGTGCCT 9346 Query 2306 AGAAAAATCAGCTTTGCGCCGTTGTTGCCGATGACAATCGGGTCGCCGGTCAGGTCGA-- 2363 ||||| | | | |||| | || | || ||||||||||| || || |||| Sbjct 9347 AGAAAGCGTAACGT--CGCC-TCATTCGGCAAGATGATCGGGTCGCCTGTTAGCTCGACA 9403 Query 2364 -CGTCAACCAGTCGCGCAAACTGGATGATGTATTCCCGGAACACGTAAGCCTGCGTTTTA 2422 || | || |||||||||||| ||||| | | ||| |||| || || | || Sbjct 9404 TCGGCGGCCTCGCGCGCAAACTGGCAAATGTACTGCGTGAAAACGTGCGCGTGTGCCTTG 9463 Query 2423 CTGGCCGACAGAAAAATCTGGTTATGGCCGGTCTTGAGCGCGCGCAGCAGTGCCTCGCGG 2482 |||||||||||||||||||| | |||||||| ||| |||| ||||||||| || Sbjct 9464 CTGGCCGACAGAAAAATCTGATCGCGGCCGGTCGTGATCGCGTCGTCCAGTGCCTCTCGT 9523 Query 2483 GAAAAGTAGAACGTCGCGCCAATCTGGCGGGATTTGAGAATATCGCG 2529 | || || |||||||||| ||||| || || |||||||| | ||| Sbjct 9524 GCGAAATACCACGTCGCGCCGATCTGCCGCGACTTGAGAATGTTGCG 9570 Score = 185 bits (204), Expect = 2e-42 Identities = 336/484 (69%), Gaps = 6/484 (1%) Strand=Plus/Plus Query 294 TCGTTACGCACAAAGACCTTTGCCACCTTCTCAACGTCGCCCATTGAGCCGATATT-CTC 352 || |||||| | || |||| || || | || | |||| | | |||| |||| ||| Sbjct 7383 TCATTACGCCCGAATACCTCGGCGGCCGTGTCGGCCGCGCCAAATCCGCCGGTATTGCTC 7442 Query 353 AGGCTTGCCGCCCATGAGCTGGAACGGTACGCGGTGTGCATCCATCAGGTCGGCG-GCGC 411 ||| | ||||||||||| || | ||| || || | | || |||| || ||| Sbjct 7443 -GGCACGATCCCCATGAGCTGCGGGGGGATGCGATGCGCCGCGAGCAAGTCGTCGCGCG- 7500 Query 412 TGGCTTTCTTGATGTTGAAAAAGTCATCCTTTGTGGCGACTTCGCTCAATGGCACGATTT 471 || | |||||||| |||||||| || || || | | ||| ||| | || | || | Sbjct 7501 TGACATTCTTGATATTGAAAAACTCGTCTTTCGCCGTGACCTCGGAAACGGGAATGAGCT 7560 Query 472 TGATGCCGTCCGGTTTTCCGCCGGGAGCGTAGAAAAACAGGTTTTTAAAGTTGCCGAGCC 531 ||| ||||| || ||| || ||||| | ||||||||| || ||||| ||| Sbjct 7561 GGATACCGTCTTTCTTGCCGTTCGGCGCGTACATGAACAGGTTTCGGAAATTGCCTGGCC 7620 Query 532 CTTTCGAGTTACGCATCGCCTCGCGCAGCGATTCGACGTCGG-TCGCGCTCTGCGCCGGG 590 | || ||| || ||||||||||| ||||| |||| | ||| |||||||| Sbjct 7621 CCTTGCTGTTTTTCAACGCCTCGCGCATGTTGTCGACATCGGTTTGCG-ACTGCGCCGCA 7679 Query 591 TCAGTCACATACATGATGTAACCTGCGTGCGCGCCGTTCTGGTAATACTTGCGGCGGAAC 650 || |||| |||| ||| | || ||||||| || |||| ||||||| ||||| || Sbjct 7680 TCCGTCATGTACAGGATAAAGCCCGCGTGCGAACCATTCTCGTAATACCGCCGGCGAAAT 7739 Query 651 AGCGTCGCGGATTCATTCAGCCATGCGGAATTAAGCGCGCTGAGATATTCAGGCAGGCCG 710 |||||||| || || |||| |||||| | | || |||| ||||||||| |||| ||| Sbjct 7740 AGCGTCGCCGACTCGTTCAACCATGCCGCGTGCAGGGCGCCGAGATATTCGGGCAAGCCA 7799 Query 711 TAAATCTCCTGATTAATATCAGGCTCCAGCAGGTGGAACACGGTATCGGGTGCGAACTCA 770 || | |||||||||||| || || |||| || ||| |||||| ||| |||||||| Sbjct 7800 TACACCTCCTGATTAATGTCCGGTTCCATCAAGTGATGCACGGTCCCGGCCGCGAACTCG 7859 Query 771 TGCG 774 |||| Sbjct 7860 TGCG 7863 Score = 89.7 bits (98), Expect = 1e-13 Identities = 151/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 951 AGCAGCGGGTGCGGAATGTAGGTGCTCGCGAGCACGTTGCGTTTAACGTAAATCGGTGAG 1010 |||| | |||||||||| | || || |||||||| ||||| | ||| |||| ||| Sbjct 8040 AGCAACCTGTGCGGAATGAACGTCGCCGATAGCACGTTACGTTTGAAGTAGATCGCCGAG 8099 Query 1011 CTGTGATGCACTGCAGAGCGCAGGCTTTTTGCCAGCCCGGAGAAGCTGACCGGAGGCTCG 1070 | |||||| || | | ||| | |||| ||||| || || | ||||| |||||| Sbjct 8100 CCGTGATGGACGCCGGCGCGGAATGTTTTAGCCAGGCCCGACCACGACACCGGCGGCTCG 8159 Query 1071 TACCATTTGCCGTTACTGATGCAC---TCGACGTAATCCAGAATATCG-CGCTTATCGAG 1126 |||| |||||| | || ||| |||||||| || ||||| ||| ||| || | Sbjct 8160 AACCAGTTGCCGG--CCGAC-CACGTTTCGACGTAGTCAAGAATCTCGGCGCGG-TCCAT 8215 Query 1127 CACCGGCACCGGCTCACCGAAGGTGAATGCCTC 1159 || ||||||| || ||||||||||| ||||| Sbjct 8216 TACTGGCACCGCGTCGCCGAAGGTGAAGGCCTC 8248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94945364492330