Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq59190 102 6e-17 seq146 102 6e-17 seq2782 95.1 8e-15 seq66879 84.2 1e-11 >seq59190 Length=243 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||||||||| || || || || || || || || ||| | Sbjct 32 ATGCAGATTTTCGTCAAGACCCTCACGGGTAAGACAATTACCCTTGAGGTCGAGTCCTCT 91 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || | | | || || || || |||||||| || | || || || || Sbjct 92 GACACTATCGAGAGTGTCAAGAC-CAAGATCCAAGACAAAGAGGGAATCCCTCCCGACCA 150 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || || || || || || || || || | ||| ||| | || ||||| Sbjct 151 ACAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGACGTACTCTTTCTGACTACAA 210 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| |||||||| Sbjct 211 CATCCAAAAGGAGTCCAC 228 >seq146 Length=178297 Score = 102 bits (112), Expect = 6e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 23614 CAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGAC 23673 ||||| |||||||| |||||||| || || || || ||||||||||| || | | ||| Sbjct 157585 CAGATCTTCGTTAAGACCCTCACTGGCAAGACTATTACTCTCGAAGTCGAGAGCTCTGAC 157526 Query 23674 ACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAG 23733 || |||| | |||| || ||| ||||| || || | || || || ||||| Sbjct 157525 ACCATTGAGAGCGTAAAGACTAAGATTCAAGACAAGGAGGGAATTCCCCCTGACCAACAA 157466 Query 23734 CGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATA 23793 || | || || ||||| || ||||| || || | |||||| | ||| |||||||| Sbjct 157465 CGCCTCATCTTCGCCGGAAAGCAACTCGAGGATGGACGCACCCTCTCCGACTACAACATT 157406 Query 23794 CAAAAAGAGTCCAC 23807 ||||| |||||||| Sbjct 157405 CAAAAGGAGTCCAC 157392 >seq2782 Length=10868 Score = 95.1 bits (104), Expect = 8e-15 Identities = 142/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 23606 TTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACT 23665 ||||| || |||||||||| || |||||||| || ||||| || || | || || || Sbjct 9054 TTAAATTGTAGATTTTCGTCAAGACCCTCACTGGTAAAACCATTACCTTGGAGGTCGAGA 8995 Query 23666 CCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAG 23725 | | ||||| |||| | || || || ||||| ||||| | || || | Sbjct 8994 GCTCTGACACCATTGAGTCCGTGAAGACGAAGATCCAGGACAAGGAAGGAATCCCCCCTG 8935 Query 23726 ATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATT 23785 | ||||| ||||| || ||||||||||| || || || || | |||||| | ||| | Sbjct 8934 ACCAACAACGTTTGATCTTTGCCGGCAAGCAGCTCGAGGATGGACGCACCCTCTCCGACT 8875 Query 23786 ACAACATACAAAAAGAGTCCAC 23807 ||||||| || || |||||||| Sbjct 8874 ACAACATCCAGAAGGAGTCCAC 8853 Score = 82.4 bits (90), Expect = 5e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 23615 AGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACA 23674 |||||||||| || ||||||||||| || |||||||| | || || || | |||||| Sbjct 9669 AGATTTTCGTCAAGACCCTCACGGGCAAGACGATCACCTTGGAGGTGGAGAGCTCGGACA 9610 Query 23675 CTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGC 23734 | |||| | || ||| || ||||| ||||| | || || || ||||| | Sbjct 9609 CCATTGAGTCCGTCAAGACAAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAACAAC 9550 Query 23735 GTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATAC 23794 |||| || || || || || ||||| || || | ||| || | || || ||||| | Sbjct 9549 GTTTGATCTTCGCTGGAAAGCAACTCGAGGATGGACGTACCCTCTCTGACTATAACATCC 9490 Query 23795 AAAAAGAGTCCAC 23807 | || |||||||| Sbjct 9489 AGAAGGAGTCCAC 9477 >seq66879 Length=210 Score = 84.2 bits (92), Expect = 1e-11 Identities = 108/148 (73%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 23695 AAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAA 23754 |||||| ||||||||||| | || || || ||||||||||| || || || || || Sbjct 209 AAAATTCAGGACAAAGAAGGAATCCCCCCTGACCAACAGCGTTTGATCTTCGCTGGAAAG 150 Query 23755 CAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACAT 23814 || |||| || | |||||||| |||| |||||||| ||||| ||| |||| | || Sbjct 149 CAGTTGGAGGATGGTCGCACTTTGAGCGACTACAACATCCAAAAGGAGAGCACACTGCAC 90 Query 23815 TTAGTTTTAAGGTTGCGAGGAGG-ATCA 23841 | || | | ||| ||||||| |||| Sbjct 89 CTTGTCCTCCGCTTGAGAGGAGGTATCA 62 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337722524960996