Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_030909.1 Length=50183 Score E Sequences producing significant alignments: (Bits) Value seq5220 165 3e-36 seq5633 161 3e-35 >seq5220 Length=4210 Score = 165 bits (182), Expect = 3e-36 Identities = 169/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 33988 CCGTTGCGGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGGTGTCCGGGTGA 34047 ||||| || ||||| ||||||| | || ||| ||| || | ||||||||| Sbjct 1947 CCGTTACGCTGCTTGCCGATGATGATTTCGGCCGTGCCCTTGTCGGGACTGTCCGGGTTG 1888 Query 34048 TAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGAC 34107 ||||| ||||| || || | ||||| ||| ||||| |||||||||||||| || || || Sbjct 1887 TAGACTTCGTCGCGATAGATGAACAGGATGACGTCCGCGTCCTGCTCGATTGCGCCCGAT 1828 Query 34108 TCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAGCGGTTGAGC 34167 || |||||||||||||||| ||| ||||||||||| ||||| ||||| |||||| ||| Sbjct 1827 TCACGCAGGTCCGACATCACCGGCCGCTTGTTCGGGCGCTGTTCCAGACCGCGGTTCAGC 1768 Query 34168 TGCGACAGCACGATCACGGGGATACCAAGCTCCATGGCCAG 34208 ||||| ||| ||||||| || | | || ||| | ||||| Sbjct 1767 TGCGAGAGCGCGATCACCGGTACGTCCAGTTCCTTCGCCAG 1727 >seq5633 Length=3737 Score = 161 bits (178), Expect = 3e-35 Identities = 510/780 (65%), Gaps = 21/780 (3%) Strand=Plus/Minus Query 45294 CGCGCCTCGTCCTGGGGCGCCCTTTTCGACTGCGGGTACCGCTGGGAGGGCGTACACCTC 45353 ||||| || | ||||| |||| |||||||||| | || |||| |||||| Sbjct 1414 CGCGCATCCGCATGGGGAACCCTGTTCGACTGCGCAATGAAATTTGAAGGCGAACACCTT 1355 Query 45354 CTGAAGATGCGCAGCGCATCATCCCCCCGGGCGCTGCTCGGTACCGCGATCCACGCAAGC 45413 || |||||||| || || || || || |||||| || ||| | ||||| ||| Sbjct 1354 CTCGGGATGCGCAAGGCGTCGGGCCTGCGCGCCACGCTCGGCACGGCGGTGCACGCCAGC 1295 Query 45414 ACCGCCGCGTTCGACGCGGCACGAGTGAACGGCGAGCCGATCAGCGCCT-ACGACGCCTC 45472 ||||| ||| ||| ||| | | ||||| | ||| | ||||| |||| || | Sbjct 1294 ACCGCAGCGAACGATCAGGCGCACCTCGACGGCAACCCGCTGT-CGCCTGACGATACCGC 1236 Query 45473 GGAACTGCTGGTGCACACGCTGCAGCAGCCGGATTTCGAGGTCGACTGGCGCGGCTCCGA 45532 | || | | |||| ||||| | ||| || ||||||| ||| | ||| Sbjct 1235 CGGCGTGTTCATCGACACCCTGCATAACCCGACGCAAGACGTCGACTACAGCGACGACGA 1176 Query 45533 CATCAGCCCGCGCGAAGCCGAGTCCACCGGACTGACGCTGCACACGAAGTACTGCAANNN 45592 | | ||||||||||||| | ||| ||| ||||||| ||| ||| ||| Sbjct 1175 TCTGACGTTGCGCGAAGCCGAGCGGATCGGCCTGTCGCTGCATACGCGGTATTGCCTGGA 1116 Query 45593 NNNNNNNNNNNNNNACGACTTCGTCGCCGTCGAGTTGACGACCAAGCCGATGGAGATCGA 45652 ||| | | || ||||| ||| | | |||| | |||||||| Sbjct 1115 GATCGCCCCTCAGTTCGAGTACACGGCGGTCGAAATGAAGCTCTCGCCGTTCGAGATCGA 1056 Query 45653 CTGCGGTGGCGGGATCATCGTCCGTCTGACCGGCCAGCTCGACCGCGCCCGCATCAAGCG 45712 |||||| ||||| | ||||| || |||||||| | | |||||||| ||| || ||| Sbjct 1055 CTGCGGCGGCGGCACTATCGTGCGCCTGACCGGTTCGATGGACCGCGCACGCGTCGCGCG 996 Query 45713 C-GATAGCCACGGCGTCGGCATCGCAGACGTGAAGACTGGCGGCGCCGCGGTGAGCCAGG 45771 | | || |||| | | ||| | ||| |||||||||| ||||| | | ||| Sbjct 995 CCGGGAGG-ACGGAATTGCCATTCCTGACCTGAAGACTGGGCGCGCCA---TCATTCAGA 940 Query 45772 GCGTGGCCAAG---ACC--AAGGGACACAAGGCCCAGATCGGCACCTACGAACTGCTCTA 45826 || |||| | ||| ||||| | ||| ||| ||||||| ||| | || | || Sbjct 939 ACG--GCCAGGTGAACCTGAAGGGCAAGTCGGCGCAGCTCGGCACGTACCAGCTTTTGTA 882 Query 45827 CGAGCACACCACCGGCGACCCGATCACCGCGCCGGCCGAGATCATCGGCCTGAAGACCAA 45886 |||||||||||| || |||| | | || |||| ||||||||| |||| |||| Sbjct 881 CGAGCACACCACGAAGGAGCCGA-CGGTGGGC-GGCC-AGATCATCGCCCTGCCGACCGC 825 Query 45887 GGGCAAGCCCGAGGCGGCAGTCGGCGAAATCATCGGCGCGCGCCAGGTGATGGTCGGCAG 45946 |||||| | | | | ||| || | ||| |||||| | || ||||| |||| Sbjct 824 CGGCAAGACAGCGCCAATGGTCAGCCCGCTGTTCGACGCGCGACGCGTCATGGTGGGCAC 765 Query 45947 CGAGTCGCACCGCGGCCTGATCGATTACGCGGCGGACATGTTCCGCACCGGCCTATTCCC 46006 ||| ||||||||||||||| | | ||| || | |||||||||| |||||| || || Sbjct 764 CGAAGACCACCGCGGCCTGATCCAGTTCGCCGCCGCGATGTTCCGCAGCGGCCTGTTTCC 705 Query 46007 ACCCAACCCGCAA--AGCCCGCTGTGCAGCCCGAAATACTGCCCGCGCTGGGCGACCTGC 46064 ||||| || ||| | || ||| | |||| || |||||| |||||||| ||||||| Sbjct 704 TCCCAATCCCCAATCGGTCCTCTGCTC-GCCC-AAGTACTGCGCGCGCTGGAAGACCTGC 647 Score = 140 bits (154), Expect = 1e-28 Identities = 352/532 (66%), Gaps = 35/532 (7%) Strand=Plus/Minus Query 46393 TTTGACCAGATCCAGCGCGTCGCCAAGGCGCTCAGCGCGTCCACCCTGGTGCCTGTGCAG 46452 || || | ||| ||||||| ||| || ||| | | || || |||| || || | Sbjct 526 TTCGAACTGATGCAGCGCGCCGCAAAATTGCTGACCAACTCGACGTTGGTACCGGTTGCG 467 Query 46453 TACCGCGCCTTCGCCGAAGTGAAAGAGCGCGGCAAAGTGGTCGGCTA------CACCCCG 46506 || || || ||||||| || ||| |||||| || |||||| || || Sbjct 466 TATCGTGCACAGACCGAAGTCAAGGAGTACGGCAAGGTCACCGGCTATGAAGACAATCCC 407 Query 46507 AACGGCGCCGGCCTGCCGAACTGCATCGTGGCGATGAACATGGCGCAGCGTATGGGTGCC 46566 ||||| || | || ||||| |||| ||| ||||||||||||| || ||||| ||| Sbjct 406 AACGG-----GCTTTCC-AACTGTGTCGTCGCGCTGAACATGGCGCAACGCATGGGCGCC 353 Query 46567 GACCCGCTCATGGTGATGCAGAACCTGTACGTGATCGAGGGCCGTCCGAGTTGGTCCAGT 46626 || ||||| |||||||||||||| ||||| | |||| ||||| || ||||| Sbjct 352 GATCCGCTGATGGTGATGCAGAATTTGTACATCGTCGAAGGCCGCCCCTCCTGGTCATCG 293 Query 46627 CAGTTCATCATCGCCTCGATCAACAGTTGCGGCCGCTTCAGCCCGCTGCGTTTCGACCTC 46686 || ||||||||||| |||||||| ||||| | | ||||| || || ||| | Sbjct 292 CAATTCATCATCGCGGCGATCAACTCGTGCGGGAAGTACTCGCCGCTTCGCTTTGACTT- 234 Query 46687 AGCGAGCCCGGCAA-AGA---GGAAGAGGTCAGCTACGAGGTGA-CGACCTGGAAGAATG 46741 |||||| |||| || || || || | |||| | | || ||| | |||| Sbjct 233 ---GAGCCCTGCAACCGATCCCGAGGAAGTGACCTACAACGCGACCGAGTGGCAAGACCA 177 Query 46742 GCAACAGGACCCAG--GAAAAG------------CGGAAGGCAAAGATCCGCCATCGCTC 46787 || | | || | ||||| |||||| || | || || | | Sbjct 176 GCCGAATGGCCGTGCCAAAAAGGTGAGCGTACCCAGGAAGGTAACCGTTCGGCACCAGAC 117 Query 46788 CTGCACCGCCTGGGTGATCGAGAAGGAAACCGGCGAGCGCCTTGACGGCCCGACCGTCTC 46847 ||| ||| |||| |||||| ||| | ||||| |||||||| || |||||| || Sbjct 116 ATGCGTCGCGTGGGCGATCGAAAAGCAGACCGGTGAGCGCCTCGAATCACCGACCATCAG 57 Query 46848 CATGCAGATGGCGATCGACGAGGGATGGCTCACCAAGAACGGCAGCAAGTGG 46899 || ||||||||||| ||||| || ||||| || ||||| |||||||||||| Sbjct 56 TATTCAGATGGCGATTGACGAAGGCTGGCTGACGAAGAATGGCAGCAAGTGG 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160331210724630