Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_030929.1 Length=49033 Score E Sequences producing significant alignments: (Bits) Value seq7990 100 9e-17 seq5633 87.8 6e-13 >seq7990 Length=2043 Score = 100 bits (110), Expect = 9e-17 Identities = 125/169 (74%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 38688 CTTCGACAGGCAGATATCGAAGTG-CTCCTTGATGGTCCCGGCATGCTGAATCCACTTCC 38746 ||| |||||||| || ||| |||| || || | |||||| | |||| ||| || | Sbjct 1875 CTTGGACAGGCAAATGTCGTAGTGGCTGTGCGACGTCCCCGGCTT-CTGATGCCATTTGC 1933 Query 38747 GCTGAACACCGATCTTGTCTGCCATTGCGAGCAGTTCCTCGGTCGTGTCCGCGAGCATGT 38806 | || ||||| | ||||| ||| ||| ||||||| |||||||||| ||||| Sbjct 1934 GGGCGACGCCGATGCGAGCGGCCATCGCGTGCAATTCCTCGTCAGTGTCCGCGACCATGT 1993 Query 38807 GACACATCTTCATGCGGCCAAAGGTTGCGTTCATGTCGTCGACGTAAAC 38855 |||||||| ||||||||| ||| | ||| ||||||||||||||| || Sbjct 1994 GACACATCACCATGCGGCCGAAGTTGGCGCGCATGTCGTCGACGTAGAC 2042 >seq5633 Length=3737 Score = 87.8 bits (96), Expect = 6e-13 Identities = 133/187 (71%), Gaps = 8/187 (4%) Strand=Plus/Plus Query 44668 TCAGTCGGTGTAGGCGATGTACTTGAACTGGCCTTTCTCTTCGTTGAAGTACTCGAAGCG 44727 |||||| || |||||||||||||||||| ||| || ||| | ||||||||| Sbjct 2079 TCAGTCCGTATAGGCGATGTACTTGAACCTGCCGC------CGCCGAACTGCTCGAAGCG 2132 Query 44728 GCCGCCAAACGTCCCGATCACGGCTTTTTCAACCTCGGCGCGCGAAGTGCCGATGGGGAA 44787 |||||| || || ||| |||||| || || || || |||||| | || | ||| | Sbjct 2133 GCCGCCGAAGGTTCCGCGCACGGCGTTCTCGACGTCTTCGCGCGTCGCGCTGGGAGGGTA 2192 Query 44788 AACTCCCTTCTTGATCATTGACGCGCCCGAATG-CGGTTCCCATGTCCAGTCGATTTTGG 44846 || || | ||||||||| | ||||| ||| || | || | || ||||||||| || | Sbjct 2193 GACCCCTTCCTTGATCATCGTCGCGCTCGAGTGCCCCTTGCTGTG-CCAGTCGATCTTTG 2251 Query 44847 TTGGGTC 44853 | | ||| Sbjct 2252 TGGTGTC 2258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156654256046530