Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_030931.1 Length=41871 Score E Sequences producing significant alignments: (Bits) Value seq3196 145 2e-30 seq5505 80.6 7e-11 >seq3196 Length=8014 Score = 145 bits (160), Expect = 2e-30 Identities = 142/183 (78%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 15838 GTGAGCACGATCATCATGTCGGCCTGCTGGCCTCTCCAGGGAATGAGCCCTGCGCAGAAG 15897 ||||||||||| |||||||||||||||||||| ||||| |||||| | || |||||| Sbjct 3734 GTGAGCACGATGATCATGTCGGCCTGCTGGCCGCTCCAAGGAATGTCTCTGGCACAGAAG 3793 Query 15898 GCGGTGCTTATCTCGCTGGCAGACCAGGCGAACGACCAAGGGGTGTGCTGGCCGGCGGTG 15957 || ||||| |||||||| || || | ||||||||||| || |||||||||||| | | Sbjct 3794 GCCGTGCTGATCTCGCTCGCCGATAACGCGAACGACCAGGGCGTGTGCTGGCCGTCCATC 3853 Query 15958 GACAGCATAGCGACGCGTTGCTGCCTGTCGAAGCGCGCTGTGCAGCAGGCCATCAAGTGG 16017 | | || | || ||| ||| || ||||||| |||||| | |||||||||||| Sbjct 3854 GCAACGATCGGGAAGCGGATTTGCGCATCCGAGCGCGCGGTGCAGAACGCCATCAAGTGG 3913 Query 16018 CTG 16020 ||| Sbjct 3914 CTG 3916 >seq5505 Length=3861 Score = 80.6 bits (88), Expect = 7e-11 Identities = 82/107 (77%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 2252 GAACACATTGCCGACGATGAACCGGTGACCTCCGTTGCGCAGAGTGAAGCCGCGCCACTT 2311 |||||| |||||||||||||| || | || |||||| | ||||| ||| |||||| Sbjct 3647 GAACACGTTGCCGACGATGAAGCGCCGGCCGCCGTTGACCCTCGTGAAACCGATCCACTT 3706 Query 2312 GCGTACCGTTGCATCGTCGATGCTGGCGTCCGCGGTGCTGGGGTTGA 2358 ||| ||||| || ||||||| | ||||||| || || ||||||| Sbjct 3707 GCGCACCGTCGCGTCGTCGAGGGTGGCGTCGGCCGTTGATGGGTTGA 3753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133754821781702