Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30]
69,687 sequences; 205,175,886 total letters
Query= NC_030940.1
Length=32637
Score E
Sequences producing significant alignments: (Bits) Value
seq3945 237 3e-58
>seq3945
Length=6260
Score = 237 bits (262), Expect = 3e-58
Identities = 686/1035 (66%), Gaps = 18/1035 (2%)
Strand=Plus/Minus
Query 1214 CAGGGTGAAGGCCCTACAACGGATGCTGACCCGCTCGA-CGTCGGCCAGGTACCTGGCTG 1272
|| |||||| ||| | ||| || ||||| ||| ||| | |||| ||| | | || |
Sbjct 1607 CAAGGTGAAAGCCTTGCAATGGCTGCTGGCCCATTCGTTCAGCGGCAAGGCAT-TAGCCG 1549
Query 1273 TACGGAGAGTCACTGAAAACCAGGGCAAGCGCACGGCGGGAGTCGACCGCGTGCTCTGGG 1332
| | | || |||||||| | |||||| ||| | || |||||| || |||||
Sbjct 1548 TCAAGCGGGTGACTGAAAATAAAGGCAAGAACACCCCCGGTGTCGACAAGGTCATCTGGA 1489
Query 1333 ATACGCCTGACACCAAGTGGAAAGCGGCACAAGGGTTGAAAAGGCGCGGGTACCAACCTC 1392
| || || | | ||| || ||| |||||| || || || || |||
Sbjct 1488 AAACACCGGGGGCAAAGACCAACGCGATTGCGTCGTTGAAGAGACGGGGTTATTCGGCTC 1429
Query 1393 GGCCTCTACGGCGAGTGTTCATCCCGAAGTCGAACGGAAAGGAGCGCCCCCTGGGTATCC 1452
|| || ||| | || | || |||||| |||||| || | | || || || || |
Sbjct 1428 TTCCGCTTCGGAGGGTAATGATACCGAAGAAGAACGGGAAAATGAGGCCGCTCGGCATAC 1369
Query 1453 CGACCATGA-CTGACAGGGCAATGCAGGCACTCTACCTGCTCGCTCTGTCGCCCATTGCA 1511
| ||| ||| |||||| ||||| ||| | | ||||| |||||| ||| ||||
Sbjct 1368 CCGTGATGCGCTG-CAGGGCGATGCAAGCATTGCATCTGCTTGCTCTGGAGCCGGTTGCG 1310
Query 1512 GAAACCACCGGCGATCCGAACAGCTATGGCTTCAGGATCGAGCGATCCACGGCGGATGCA 1571
|||||||||| ||| ||| || ||||| |||||| ||||| || || || || ||
Sbjct 1309 GAAACCACCGCCGACCCGGACTCGTATGGGTTCAGGCCGGAGCGCTCGACAGCCGACGCG 1250
Query 1572 ATGTCCCAGTTGTTCGTTTGCCTATCCGGAAAGGCTTCGGCCCAATGGATACTGGAGGCG 1631
| || | ||| | ||| | ||||| | || || ||| | ||||| ||
Sbjct 1249 GGGGAGCAATGCTTCATCGCCCTCGCGAGAAAGACAAGCGCGCAGTGGGTGCTGGAAGCC 1190
Query 1632 GACATACAAGGGTGTTTTGACCACATCAATCATGACTGGCTACTGAACCATGTCCCCACG 1691
||||| | | |||| ||| | |||| || | ||| | | | | ||||||||
Sbjct 1189 GACATTAAGGCCTGTTACGACGAGATCAGCCACGCATGGATGGTCGCCAACATCCCCACG 1130
Query 1692 GACAAGGTGATCCTCCGGAAATGGTTGAAGGCCGGCGTGATCCACAAAGGCCAGCTCCAG 1751
|||||||||||||| | ||| ||| | ||||| || | || | | | | |||
Sbjct 1129 GACAAGGTGATCCTGCAGAAGTGGCTCAAGGCGGGATATGTGTACCAGGACGAACTCTTC 1070
Query 1752 GCAACGGATGCTGGAACACCTCAAGGCGGAATCATCTCGCCTACTTTGGCAAACATGGTG 1811
| || ||||| || |||||||| ||||| || || || |||| |||||| |
Sbjct 1069 CCGACCGATGCCGGGGTCCCTCAAGGGGGAATTATTTCACCGGTAGTGGCCAACATGACG 1010
Query 1812 CTCGATGGCCTGGAATCACAGCTCAAG-CGACA-CCTGGGCGTGACAAGGGCGAAGAAG- 1868
| ||||| || ||| | ||| | | || | | ||| || ||| ||||| | |
Sbjct 1009 TTGGATGGTCTTGAAGCGATGCTGAGGAAGAAATTCCCGGC-TG-CAA-AGCGAACAGGC 953
Query 1869 CTGAAACTCAATGTGGTGCGCTATGCGGACGACTTCGTCATCACCGGTGTCTCTCCCGAG 1928
|||||| | | ||||||| || |||||||||||| |||||||||| ||| |||
Sbjct 952 CTGAAAATGCACATGGTGCGGTACGCGGACGACTTCATCATCACCGGCAACTCGAAAGAG 893
Query 1929 GTACTGGAGAAAGAAGTCAAACCCTGGGTAG-AGCAGTTCCTGGCGGTACGCGGGCTGCA 1987
|||||| | || |||||||| ||| | ||| || ||||||| ||| |||||
Sbjct 892 TGGCTGGAGCACGAGGTCAAACCTGCGGTGGTCGCA-TTTCTGGCGGAACGTGGGCTCGT 834
Query 1988 GCTCTCTCTGGAGAAAACGCGGATCGCCCACATAGATCAGGGCTTCGACTTCCTCGGTTG 2047
|| || | ||| || || | | | ||||| || | || |||||||||||||| ||
Sbjct 833 CCTATCGCCGGACAAGACCAAGGTAACGCACATCGACGAAGGGTTCGACTTCCTCGGATG 774
Query 2048 GAACTTCCGCAAGTACAACGGGAAGCTTCTGATCAAACCCAGCCAGAA--GAACGCGAAA 2105
||| |||||||||||||||| ||||| |||| || || | | || ||||| |||
Sbjct 773 GAATATCCGCAAGTACAACGGCAAGCTGTTGATGAAGCC--GTCGAAAGCGAACGTCAAA 716
Query 2106 GCGTTCTACGGCAAGGTGAAGGAGGTCATCGAAACCAGCAGGACGGCAAGGCAAGAGGAC 2165
||| | | |||| | ||| |||||| || || || |||||| | |||| ||
Sbjct 715 GCGCACCTTGACAAGATCCGGGAAGTCATCAAAGGCAACAAGACGGCCAAACAAGCAAAC 656
Query 2166 TTGATCCGAACGCTGAATCCGATTCTGCGCGGCTGGGCGCTGTATCACCAGCCA-GTGGT 2224
||||| | ||| || ||||||||||| |||||||| ||||||| |||| | |||
Sbjct 655 TTGATATGCCTGCTCAACCCGATTCTGCGGGGCTGGGCAAACTATCACC-GCCATGCGGT 597
Query 2225 TGCCAAGCAAACGTT 2239
|||||| |||| ||
Sbjct 596 CGCCAAGGAAACCTT 582
Score = 147 bits (162), Expect = 5e-31
Identities = 140/179 (78%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 747 GGAACGTGGTAAGCCCGTATCGCCGCCCTCGGGGCAGGGGAGCCGTAAGGCGAACTGTTG 806
||||||||| || |||||||||| ||||||||| | ||||| ||||| | ||
Sbjct 1952 GGAACGTGGAAATCCCGTATCGCTCCCCTCGGGGACAGCAAGCCGCAAGGCTTGCCCATG 1893
Query 807 GCGGTGCGGGTATGGGATCGCAGAGAAAGCGAACGCCAGGCTGTAATCGTCTGGATAGGG 866
||| ||| || |||| | || ||||||||||||| |||||| || |||||||||
Sbjct 1892 GCGATGCAGGCGAAGGATTGAGGACAAAGCGAACGCCATCCTGTAACCGGATGGATAGGG 1833
Query 867 GTTGGAACATCACCCCACGGGAAACCGGGCAGACTTCTGCGTGGTCTTTCGTCGCAAGA 925
|||| ||||||| |||||| |||| |||||||||||| |||||||| ||||| |||||
Sbjct 1832 GTTGCAACATCATCCCACGCGAAAGCGGGCAGACTTCCTCGTGGTCTCTCGTCACAAGA 1774
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 104230474392506
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |