Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_030940.1 Length=32637 Score E Sequences producing significant alignments: (Bits) Value seq3945 237 3e-58 >seq3945 Length=6260 Score = 237 bits (262), Expect = 3e-58 Identities = 686/1035 (66%), Gaps = 18/1035 (2%) Strand=Plus/Minus Query 1214 CAGGGTGAAGGCCCTACAACGGATGCTGACCCGCTCGA-CGTCGGCCAGGTACCTGGCTG 1272 || |||||| ||| | ||| || ||||| ||| ||| | |||| ||| | | || | Sbjct 1607 CAAGGTGAAAGCCTTGCAATGGCTGCTGGCCCATTCGTTCAGCGGCAAGGCAT-TAGCCG 1549 Query 1273 TACGGAGAGTCACTGAAAACCAGGGCAAGCGCACGGCGGGAGTCGACCGCGTGCTCTGGG 1332 | | | || |||||||| | |||||| ||| | || |||||| || ||||| Sbjct 1548 TCAAGCGGGTGACTGAAAATAAAGGCAAGAACACCCCCGGTGTCGACAAGGTCATCTGGA 1489 Query 1333 ATACGCCTGACACCAAGTGGAAAGCGGCACAAGGGTTGAAAAGGCGCGGGTACCAACCTC 1392 | || || | | ||| || ||| |||||| || || || || ||| Sbjct 1488 AAACACCGGGGGCAAAGACCAACGCGATTGCGTCGTTGAAGAGACGGGGTTATTCGGCTC 1429 Query 1393 GGCCTCTACGGCGAGTGTTCATCCCGAAGTCGAACGGAAAGGAGCGCCCCCTGGGTATCC 1452 || || ||| | || | || |||||| |||||| || | | || || || || | Sbjct 1428 TTCCGCTTCGGAGGGTAATGATACCGAAGAAGAACGGGAAAATGAGGCCGCTCGGCATAC 1369 Query 1453 CGACCATGA-CTGACAGGGCAATGCAGGCACTCTACCTGCTCGCTCTGTCGCCCATTGCA 1511 | ||| ||| |||||| ||||| ||| | | ||||| |||||| ||| |||| Sbjct 1368 CCGTGATGCGCTG-CAGGGCGATGCAAGCATTGCATCTGCTTGCTCTGGAGCCGGTTGCG 1310 Query 1512 GAAACCACCGGCGATCCGAACAGCTATGGCTTCAGGATCGAGCGATCCACGGCGGATGCA 1571 |||||||||| ||| ||| || ||||| |||||| ||||| || || || || || Sbjct 1309 GAAACCACCGCCGACCCGGACTCGTATGGGTTCAGGCCGGAGCGCTCGACAGCCGACGCG 1250 Query 1572 ATGTCCCAGTTGTTCGTTTGCCTATCCGGAAAGGCTTCGGCCCAATGGATACTGGAGGCG 1631 | || | ||| | ||| | ||||| | || || ||| | ||||| || Sbjct 1249 GGGGAGCAATGCTTCATCGCCCTCGCGAGAAAGACAAGCGCGCAGTGGGTGCTGGAAGCC 1190 Query 1632 GACATACAAGGGTGTTTTGACCACATCAATCATGACTGGCTACTGAACCATGTCCCCACG 1691 ||||| | | |||| ||| | |||| || | ||| | | | | |||||||| Sbjct 1189 GACATTAAGGCCTGTTACGACGAGATCAGCCACGCATGGATGGTCGCCAACATCCCCACG 1130 Query 1692 GACAAGGTGATCCTCCGGAAATGGTTGAAGGCCGGCGTGATCCACAAAGGCCAGCTCCAG 1751 |||||||||||||| | ||| ||| | ||||| || | || | | | | ||| Sbjct 1129 GACAAGGTGATCCTGCAGAAGTGGCTCAAGGCGGGATATGTGTACCAGGACGAACTCTTC 1070 Query 1752 GCAACGGATGCTGGAACACCTCAAGGCGGAATCATCTCGCCTACTTTGGCAAACATGGTG 1811 | || ||||| || |||||||| ||||| || || || |||| |||||| | Sbjct 1069 CCGACCGATGCCGGGGTCCCTCAAGGGGGAATTATTTCACCGGTAGTGGCCAACATGACG 1010 Query 1812 CTCGATGGCCTGGAATCACAGCTCAAG-CGACA-CCTGGGCGTGACAAGGGCGAAGAAG- 1868 | ||||| || ||| | ||| | | || | | ||| || ||| ||||| | | Sbjct 1009 TTGGATGGTCTTGAAGCGATGCTGAGGAAGAAATTCCCGGC-TG-CAA-AGCGAACAGGC 953 Query 1869 CTGAAACTCAATGTGGTGCGCTATGCGGACGACTTCGTCATCACCGGTGTCTCTCCCGAG 1928 |||||| | | ||||||| || |||||||||||| |||||||||| ||| ||| Sbjct 952 CTGAAAATGCACATGGTGCGGTACGCGGACGACTTCATCATCACCGGCAACTCGAAAGAG 893 Query 1929 GTACTGGAGAAAGAAGTCAAACCCTGGGTAG-AGCAGTTCCTGGCGGTACGCGGGCTGCA 1987 |||||| | || |||||||| ||| | ||| || ||||||| ||| ||||| Sbjct 892 TGGCTGGAGCACGAGGTCAAACCTGCGGTGGTCGCA-TTTCTGGCGGAACGTGGGCTCGT 834 Query 1988 GCTCTCTCTGGAGAAAACGCGGATCGCCCACATAGATCAGGGCTTCGACTTCCTCGGTTG 2047 || || | ||| || || | | | ||||| || | || |||||||||||||| || Sbjct 833 CCTATCGCCGGACAAGACCAAGGTAACGCACATCGACGAAGGGTTCGACTTCCTCGGATG 774 Query 2048 GAACTTCCGCAAGTACAACGGGAAGCTTCTGATCAAACCCAGCCAGAA--GAACGCGAAA 2105 ||| |||||||||||||||| ||||| |||| || || | | || ||||| ||| Sbjct 773 GAATATCCGCAAGTACAACGGCAAGCTGTTGATGAAGCC--GTCGAAAGCGAACGTCAAA 716 Query 2106 GCGTTCTACGGCAAGGTGAAGGAGGTCATCGAAACCAGCAGGACGGCAAGGCAAGAGGAC 2165 ||| | | |||| | ||| |||||| || || || |||||| | |||| || Sbjct 715 GCGCACCTTGACAAGATCCGGGAAGTCATCAAAGGCAACAAGACGGCCAAACAAGCAAAC 656 Query 2166 TTGATCCGAACGCTGAATCCGATTCTGCGCGGCTGGGCGCTGTATCACCAGCCA-GTGGT 2224 ||||| | ||| || ||||||||||| |||||||| ||||||| |||| | ||| Sbjct 655 TTGATATGCCTGCTCAACCCGATTCTGCGGGGCTGGGCAAACTATCACC-GCCATGCGGT 597 Query 2225 TGCCAAGCAAACGTT 2239 |||||| |||| || Sbjct 596 CGCCAAGGAAACCTT 582 Score = 147 bits (162), Expect = 5e-31 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 747 GGAACGTGGTAAGCCCGTATCGCCGCCCTCGGGGCAGGGGAGCCGTAAGGCGAACTGTTG 806 ||||||||| || |||||||||| ||||||||| | ||||| ||||| | || Sbjct 1952 GGAACGTGGAAATCCCGTATCGCTCCCCTCGGGGACAGCAAGCCGCAAGGCTTGCCCATG 1893 Query 807 GCGGTGCGGGTATGGGATCGCAGAGAAAGCGAACGCCAGGCTGTAATCGTCTGGATAGGG 866 ||| ||| || |||| | || ||||||||||||| |||||| || ||||||||| Sbjct 1892 GCGATGCAGGCGAAGGATTGAGGACAAAGCGAACGCCATCCTGTAACCGGATGGATAGGG 1833 Query 867 GTTGGAACATCACCCCACGGGAAACCGGGCAGACTTCTGCGTGGTCTTTCGTCGCAAGA 925 |||| ||||||| |||||| |||| |||||||||||| |||||||| ||||| ||||| Sbjct 1832 GTTGCAACATCATCCCACGCGAAAGCGGGCAGACTTCCTCGTGGTCTCTCGTCACAAGA 1774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104230474392506