Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_030943.1 Length=54990 Score E Sequences producing significant alignments: (Bits) Value seq2099 107 7e-19 >seq2099 Length=12992 Score = 107 bits (118), Expect = 7e-19 Identities = 264/396 (67%), Gaps = 21/396 (5%) Strand=Plus/Minus Query 53026 TTCGGCTTTGAACAGCGAGTTGAACGCCTCAGCCATCGCGTTGTCGTATGAATCCCCTTT 53085 |||||| || ||| ||||| || || |||| |||||||||| || || || Sbjct 6586 TTCGGCCTTATACAAGCCGTTGATCGTTTCGGCCAGTACGTTGTCGTAGGAGTCGCCGAC 6527 Query 53086 GGAGCCAACAGATG--TCACCGCTTCGGCTTCGGCCAGTCGTTCGGTGTAGCGGATGGCT 53143 || || || |||| ||| ||| | | || ||| ||||||||||| || ||| Sbjct 6526 GGTTCCGACTGATGGCTCAACGC--CCACGTCCACCAAACGTTCGGTGTACCGAATGCTG 6469 Query 53144 CGGTATTGCACTCCGCGGTCGGAGTGGTGGATCAGCCCGGCCACGTCGTGGCCGGCACGC 53203 | |||||| ||| | ||||| ||||| || ||||||| | | |||| || Sbjct 6468 AGATATTGCGACCCGTGATCGGAATGGTGAATGAGCCCGGGC--------GGCGGCTGGC 6417 Query 53204 GACCGTGCCCACAATCCCATGTTCAGGGCGTCGAGGGCGAGGTCGGTGTGCATGGTGGTC 53263 || | || || || |||||| ||||| || ||| ||| || |||| | || Sbjct 6416 GATCATGT----AACGCCTGGTTCAGCGCGTCCAGCACGAAGTCAGTTCGCATCGAGGCT 6361 Query 53264 GAGACCTGCCAGCCGACGACCATCCGCGAGAACACGTCCAGGACGAACGCCGCGTACACC 53323 || || |||| ||||||| ||||| ||||| || ||||| ||| ||||||| Sbjct 6360 GACACGCGCCAACCGACGATACGCCGCGCAAACACATCGGTCACGAAGGCCACGTACACA 6301 Query 53324 CAGCCCGAGTGGGTGCGGATGTAGGTCAGGTCCGCCACCCACAACGCGTTCGGTGCCG-- 53381 |||| || || | | ||||| | ||||| ||||||| |||||| || ||| Sbjct 6300 AAGCCGGACCATGTCCAGCAATAGGTAAAATCCGCGACCCACAGCGCGTTGGG--CCGAT 6243 Query 53382 CCGCGGTGAACTGACGGTTGACCCGGT-CAGCCGGC 53416 | || ||||||||| |||||||||| |||| ||| Sbjct 6242 CGGCCTGGAACTGACGTTTGACCCGGTCCAGCGGGC 6207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175700881279088